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TarBase v.8
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Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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Interactions: 170, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput 		Publications Cell lines Tissues Pred. Score
IRS1 hsa-miR-126-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jin Zhang et al. 2008 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr2:226736135-226736154 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
RECK hsa-miR-21-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhiyu Zhang et al. 2008 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr9:36124062-36124311 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
MAP2K1 hsa-miR-34a-5p low: 1 high: 0 1 1 1 0.998
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Atsuhiko Ichimura et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr15:66491026-66491228 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MAP2K3 hsa-miR-21-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xu Guangxian et al. 2013 RP Kidney HEK293 HEPG2 N/A
Location Method Result Regulation Validation Type Source
chr17:21312151-21314697 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
CDKN1A hsa-miR-106b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu S et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr6:36685816-36687315 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
E2F1 hsa-miR-20a-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu Q. et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
CDKN1A hsa-miR-93-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu S et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr6:36685816-36687315 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MMP2 hsa-miR-29a-3p low: 1 high: 0 1 1 1 0.519
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr16:55505720-55505768 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MMP2 hsa-miR-29b-3p low: 1 high: 0 1 1 1 0.512
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr16:55505720-55505768 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MMP2 hsa-miR-29c-3p low: 1 high: 0 1 1 1 0.524
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr16:55505720-55505768 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MYC hsa-miR-34c-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
CTDSP1 hsa-miR-124-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jaya Visvanathan et al. 2007 RP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
SOX2 hsa-miR-145-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
NA et al. 0 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MYC hsa-miR-1248 low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-125a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-1294 low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
HCN2 hsa-miR-1-3p low: 2 high: 0 2 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xiaobin Luo et al. 2008 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr19:617111-617132 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
Lu Yanjie et al. 2009 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr19:617111-617132 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MYC hsa-miR-3159 low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-375 low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-455-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0

Deprecated!

This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.



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