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TarBase v.8
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Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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Previous versions:
This is the latest version of the database. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
The previous version of TarBase (v7, legacy), may be found in this
link
.
TarBase v6 (legacy) can be downloaded in this
link
.
miRNAs
Genes
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Filters
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Species
Homo sapiens
Pan troglodytes
Macaca mulatta
Mus musculus
Rattus norvegicus
Gallus gallus
Danio rerio
Drosophila melanogaster
Caenorhabditis elegans
Arabidopsis thaliana
Glycine max
Medicago truncatula
Vitis vinifera
Oryza sativa japonica
Zea mays
Physcomitrella patens
KSHV
Epstein Barr virus
Method Type
Low-Throughput
High-Throughput
Method
2D-DIGE
3LIFE
AGO-IP
Biotin-Microarrays
Biotin-qPCR
Biotin-Seq
Chimeric fragments
CLASH
CLEAR-CLIP
Degradome
Electrophoretic Mobility Shift Assay
ELISA
Flow Cytometry
Genetic Testing
HITS-CLIP
iCLIP
Immunofluorescence
Immunohistochemistry
IMPACT-Seq
In Situ Hybridization
LAMP
Luciferase Reporter Assay
Microarrays
Northern Blot
Other
PAR-CLIP
pSILAC
qPCR
RIP-Seq
RNA-Seq
RPF-Seq
SILAC
TRAP
Western Blot
Regulation type
UP
DOWN
UNKNOWN
Validation Type
DIRECT
INDIRECT
Validated as
POSITIVE
NEGATIVE
UNKNOWN
Cell Type
108CA
113_6_4L
131_4_5B1
1386LN
16HBE14O
16HBET
1881
2102EP
22RV1
293S
3T3
4T1
5637
58F
6DT1
70Z3
769P
786O
95C
95D
A1207
A172
A2780
A2780CP
A375
A375M
A431
A498
A549
A673
AASP+
AA Sphere
ACHN
AGS
ALL Cell Lines
AML12
AML8227
AML cells
AN3CA
ASC
ASPC1
ATC
ATDC5
ATT20
BAEC
BC
BC1
BC3
BCBL1
B Cells
BCL6KO Tregs
BCLL
B.CMBA.Ov
BE1
BEAS2B
BEL7404
BEND3
BETA Cells
BEWO
BG1
BGC823
BJ
Bladder Cancer Cell Lines
B lymphocyte
BMMC
BMSC
BMSC Adipogenic
BMSC Osteogenic
Bone Marrow Aspirate Concentrate Stem Cells
Bone Marrow Cells
BOY
Breast Cancer Cell Lines
BT474
BT549
BT99
BXPC3
C2C12
C33A
C3H10T1/2
C42
C42B
C6/36
C6661
C8161
C8166
CACO2
CAKI1
CAL27
CALU1
CALU3
CAMA1
CAR1
Cardiac Muscle
CASKI
CCL86
CGTHW3
Chondrocytes
Circulating Proangiogenic Cells
CLL Cell Lines
COLO205
COLO320
Colonic Carcinoma Cell Lines
Colonic Mucosa Epithelial Cells
Colorectal Cancer Cell Lines
COS7
CRC
CRL1432
CRL1596
CRL2630
Cutaneous Cell Lines
Cutaneous Squamous Cell Carcinoma
DAOY
DDLPS
DEV_NLPHL
DLBCL
DLD1
DU145
EA.HY926
EC1
EC18
EC9706
ECA109
ECC1
EEC cell lines
EF3DAGO2
Embryoid Body
EPC
ES
ESC
ESCC
FADU
Fibroblasts
FLPIN_TREX_293
FLS
FRTL5
FUJI
G361
Gastric Cancer Cell Lines
GBM4
GBM6
GBM8
GC Cell Lines
GES1
GIST
GIST430
GIST48
GIST882
GISTT1
Glioblastoma
Glioblastoma Stem Cells
Granulosa
GSC
H1299
H22
H23
H4
H460
H69
H929
H9C2
HACAT
HADSC
HAEC
HASC
HASM
HBE
HCC1806
HCC1937
HCCC9810
HCC Cell Lines
HCCLM3
HCEC
hCMEC_D3
HCOA
HCT116
HCT8
HDF
HEB
HEC50
HEK293
HEK293A
HEK293FT
HEK293T
HEKN
HEL
HELA
Hematopoietic Cell Lines
HEP2
HEP3B
HEPA
Hepatocytes
HEPG2
HESF
HEY
HFL1
HFOB
HGC27
HIOSE80
HK2
HKESC1
HL60
HMADS
HMC
HMEC1
HMSC
HN12
HN4
HNPC
HNSCC
HNSCC cells
HPAEC
HPMVEC
HS27A
HS5
HS683
HSC3
HSCT6
HSF2
HSSYII
HT1080
HT22
HT29
HTERT_RPE1
HTM1073
HTM681
HTM Cell Lines
HTR8
HUCCT1
HUH1
HUH7
HUH7.5
HUH7.5.1
HUVEC
IMR32
IMR90
ISHIKAWA
J82
JEG3
JIMT1
Jurkat
K562
KELLY
Keratinocytes
KLE
KMCH
KMCH1
KP2
KYSE140
KYSE150
KYSE180
KYSE30
KYSE410
KYSE510
KYSE520
L1236
L428
LASP1
LCL
LCL35
LCLBAC
LCLBACD1
LCLBACD3
Leukemia Cell Lines
LIPO224B
LIPO246
Liver Cell Lines
Liver Cells
LLC
LM24142
LM9
LN18
LN215
LN229
LN308
LN340
LN428
LN464
LNCAP
LOVO
LS174T
Lung Cell Lines
Lung cells
Lung Fibroblasts
Macrophages
MALME3MR
Mammary Tumor
MC3T3
MC3T3E1
MCC
MCF10A
MCF7
MCF7FR
MCF7TAMR7
MCL
MCL Cell Lines
MDA
MDAMB157
MDAMB231
MDAMB232
MDAMB435
MDAMB435S
MDAMB436
MDAMB453
MDAMB468
MDR
ME665/1
ME665/2
ME665/3
ME665/4
ME665/5
ME665/6
ME665/7
ME665/8
Medulloblastoma Cell Lines
MEG01
Melanocytes
Melanoma Cell Lines
Melanoma metastatic Liver Cells
MES
Mesangial Cells
Mesenchrymal Stem Cells
MEWO
MG63
MGC803
MHCC97H
MHCC97L
MHHES1
MIAPACA2
Mice Mesangial Cells
MIN6B
MKN1
MKN28
MKN45
MKN7
MKN74
MLE12
MLL Bone Marrow Cells
MM Cells
MN1
MO7E
Mouse Keratinocytes
Mouse Small Intestinal Crypt Cells
MPM
MPN10 5510
MRC5
MSC
MSK543
MT1
MUM2B
MUTUI
MV
MVT1
Myeloid Leukemia Cell Line
Myoblasts
MZ1
MZCHA1
N2A
NAASM
NAIVE T
NB4
NCI60
NCIH508
NCIN87
Neonatal Epidermal Keratinocytes
Neonatal Rat Cardiomyocytes
NEURO2A
Neuronal Cell Lines
Neutrophils
NIH3T3
NK
NK92
NKL
NMUMG
NPC
NRK
NSCLC
NUGC4
OC2
OCM1
OECM1
ONS76
Oral
OSCC cell lines
OSRC2
Osteoblasts
Osteosarcoma
OV2008
OVCAR3
OVCAR8
P19
P3HR1
PAG C81–61
PANC1
Pancreatic Cancer Cell Lines
Paraganglioma Cells
PASMC
PBMC
PC12
PC3
PC9
PCA
PDAC
pDCs
PLC/PRF/5
PMN
Podocytes
PPNAD
Presomitic Mesoderm Cells
Prostate Cancer Cell Lines
Pulmonary Artery Cells
QSG7701
RAW264.7
RCC
Renal Cancer Cell Lines
Renal Glomerular Mesangial Cell
RF6A
RPMI8266
RWPE1
S2
SAECs
SAOS2
SAS
SBC3
SCC11
SCC25
SCC29
SCM1
SCOV3
SGC7901
SGN
SHEP
SHSY5Y
SIHA
SKBR3
SKES1
SKHEP1
Skin Keratinocytes
SKLMS1
SKMEL2
SKMEL28
SKMES1
SKNAS
SKNBE
SKOV3
SMMC7721
SN12PM6
SNB19
SNU016
SNU182
SNU398
SNU449
SNU5
SNU638
SPCA1
Splenocytes
SRA01/04
ST2
SUM149
SUM159
SW1116
SW1783
SW1990
SW403
SW480
SW620
SW780
T24
T29
T47D
T74D
T84
T98G
TALL
TC1
TC620
TCA8113
T Cells
TCMK1
TE1
TE2
TEC
TEU2
TFK1
THP1
Thymocytes
TIC308
TMK1
TPC1
TSCC
TZMBL
U1810
U251
U266
U2OS
U373
U87
U872M1
UM1
UM2
UMUC3
UPN514
UPN605
USSC
UUO
Uveal Melanoma cell lines
Ventricular Cardiomyocytes
VSMC
WACII
WB
WI26
WRO
WTCLS1
Y79
YT
ZR7530
βTC6
Tissue
Adipose
Adrenal Gland
Aortic Endothelium
Bile duct
Bladder
Bone
Bone Marrow
Bone Marrow/Peripheral Blood
Brain
Breast
Breast Cancerous Tissues
Bronchus
Cartilage
Cerebral Microvascular Endothelium
Cervix
Cholesteatoma
Choroid
Connective Tissue
Ear
Embryo
Endometrium
Epididymis
Esophagus
Ewing Sarcoma
Eye
Fetus
Gastric
Germline
Glia
Glioma
Head/Neck
Heart
Hela Contaminant
Hepatoma
Intestine
Kidney
Larva, Whole
Larynx
Leaf
Liver
Liver Bile duct
Lung
Lung Cancerous Tissues
Lymph Nodes
Mammary Gland
Mantle Zone
Mouse Embryo
Mouse Intestine
Mouse Lung
Mouse Ovary
Mouth
Muscle
Nervous
Oral
Oral cavity
Osteosarcoma Tissues
Ovary
Pancreas
Peripheral Blood
Peripheral Blood/Bone Marrow
Pharynx
Pituitary
Placenta
Pleura
Pleural Effusion
Presomitic Mesoderm
Prostate
Pulmonary Artery
Pulmonary Artery Endothelium
Root
Skin
Spleen
Stomach
Synovial
Thoracic Aorta
Thymus
Thyroid
Tongue
Tumor Initiating Stem Cells
Umbilical Vein
Ureter
Urinary Bladder
Uterus/Endometrium
Vascular
Vulva
Source
miRecords
miRTarBase
TarBase 6.0
TarBase 7.0
TarBase 8.0
Publication Year
Prediction score
Total Entries:
Interactions:
Cell Types:
Tissues:
Publications:
Low-yield Methods:
High-throughput Methods:
Query Mode
Search by inserting the
corresponding search fields:
miRNA name (miRBase v21)
e.g. hsa-let-7a-3p
Gene name or Ensembl Gene ID
e.g. PDS5B or ENSG00000083642
combinations of the previous
Browsing Mode
Search by selecting multiple
Filters and press the "Apply" button
e.g. Species: Homo Sapiens,
Method: Luciferase Reporter Essay,
Validated as: Positive,
Cell Type: HEK239
Query Mode Example
Browsing Mode Example
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