DIANA TOOLS - MicroT-CDS

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Results: 1424 targets for miRNAs hsa-miR-520a-3p

. Threshold is set to 0.7.

Name:	hsa-miR-520a-3p
Alternative description:	MIMAT0002834
Related names:
miRNA sequence:	aaagugcuucccuuuggacugu
External links:	miRBase
DIANA resources:	microT-CDS
Related diseases:	Acute Disease Adenoma Alzheimer Disease Anemia, Macrocytic Azoospermia Bone Neoplasms Brain Neoplasms Breast Neoplasms Breast Neoplasms, Male Carcinoma, Non-Small-Cell Lung Carcinoma, Squamous Cell Cell Transformation, Neoplastic Chromosome Deletion Colonic Neoplasms Colorectal Neoplasms Dermatitis, Atopic Diabetes Mellitus, Type 2 Disease Disease Progression Esophageal Neoplasms Fatty Liver Genetic Predisposition to Disease Glioblastoma Hematologic Neoplasms HIV Infections Hodgkin Disease Hyperglycemia Hyperinsulinism Ischemia Leukemia, Myelogenous, Chronic, BCR-ABL Positive Lung Neoplasms Lupus Nephritis Lymphatic Metastasis Melanoma Metabolic Syndrome X Microsatellite Instability Muscular Dystrophies Myelodysplastic Syndromes Nasopharyngeal Neoplasms Neoplasm Invasiveness Neoplasm Metastasis Neoplasms Neoplasms, Germ Cell and Embryonal Obesity Ovarian Neoplasms Pancreatic Neoplasms Polycythemia Vera Postmortem Changes Pre-Eclampsia Prostatic Neoplasms Psoriasis Pulmonary Embolism Retinoblastoma Stomach Neoplasms Stroke Thrombocythemia, Essential Thyroid Neoplasms Uterine Cervical Neoplasms

Ensembl Gene Id

miRNA name

miTG score

Also Predicted

ENSG00000165244 (ZNF367)

hsa-miR-520a-3p

0.999752495594203

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

2127-2148

0.0244342298613677

Position on chromosome:

9:99150350-99150371

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,xenTro2

Binding area:

(Transcript)	5'	GAAUAUG__G_G____A___CU_______	3'
		_______GG_U_AGAG_GAA__GCACUUU
		_______.\|_._\|.\|\|_\|\|\|__\|\|\|\|\|\|\|
		_______UC_G_UUUC_CUU__CGUGAAA
(miRNA)	3'	______G__A_G____C____________	5'

UTR3

9mer

1979-2001

0.0408556255828694

Position on chromosome:

9:99150202-99150224

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UUGGAA_______UCACA___________	3'
		______GCAGUUC_____GGAAGCACUUU
		______.\|\|\|\|.\|_____\|\|\|\|\|\|\|\|\|\|\|
		______UGUCAGG_____CCUUCGUGAAA
(miRNA)	3'	_____________UUUC____________	5'

UTR3

8mer

1607-1622

0.0372029691378165

Position on chromosome:

9:99149830-99149845

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,dasNov2,loxAfr3,monDom5,xenTro2

Binding area:

(Transcript)	5'	GUAUAAUGUUUA___UU______________G	3'
		____________AGU__GAA___AAGCACUU_
		____________\|\|\|__.\|\|___\|\|\|\|\|\|\|\|_
		____________UCA__UUU___UUCGUGAA_
(miRNA)	3'	___________G___GG___CCC________A	5'

UTR3

6mer

1455-1481

0.00740854792842792

Position on chromosome:

9:99149678-99149704

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5,xenTro2

Binding area:

(Transcript)	5'	A_G__C__UGUAAU___AUUU_______G	3'
		_A_GG_CC______GAG____GGCACUU_
		_\|_.\|_\|\|______.\|\|____.\|\|\|\|\|\|_
		_U_UC_GG______UUC____UCGUGAA_
(miRNA)	3'	__G__A__U________CCU________A	5'

UTR3

6mer

1113-1140

0.0034918566884182

Position on chromosome:

9:99149336-99149363

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2

Binding area:

(Transcript)	5'	U______UA____UUAUUAAACAC______	3'
		_UCCAAA___AAG___________CACUUU
		_\|\|\|\|\|\|___\|\|\|___________\|\|\|\|\|\|
		_AGGUUU___UUC___________GUGAAA
(miRNA)	3'	C______CCC____________________	5'

UTR3

7mer

579-602

0.0330300058812846

Position on chromosome:

9:99148802-99148825

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GUAU____AAU_____UUU_________A	3'
		____AUAG___UUUAA___GGAGCACUU_
		____\|.\|\|___\|..\|\|___\|.\|\|\|\|\|\|\|_
		____UGUC___AGGUU___CUUCGUGAA_
(miRNA)	3'	________________UCC_________A	5'

ENSG00000172058 (SERF1A)

hsa-miR-520a-3p

0.999749545358755

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

167-186

0.0609930432474603

Position on chromosome:

5:70213152-70213171

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UAGGAAACU___A_G___CUU__________	3'
		_________UAG_U_UAA_____AGCACUUU
		_________.\|\|_\|_.\|\|_____\|\|\|\|\|\|\|\|
		_________GUC_A_GUU_____UCGUGAAA
(miRNA)	3'	________U_____G___UCCCU________	5'

UTR3

8mer

635-662

0.0596547559756672

Position on chromosome:

5:70213620-70213647

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	C____C__CC___CCAUAAUUU________	3'
		_ACAG_CC___GG_________AGCACUUU
		_\|\|\|\|_\|\|___\|\|_________\|\|\|\|\|\|\|\|
		_UGUC_GG___CC_________UCGUGAAA
(miRNA)	3'	_____A__UUU__CU_______________	5'

UTR3

8mer

704-722

0.0255817208384174

Position on chromosome:

5:70213689-70213707

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GUGGCUCAUG__UGUAAUCU_________	3'
		__________CC________GAGCACUUU
		__________\|\|________.\|\|\|\|\|\|\|\|
		__________GG________UUCGUGAAA
(miRNA)	3'	_________A__UUUCCC___________	5'

ENSG00000163513 (TGFBR2)

hsa-miR-520a-3p

0.999476631643772

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

197-223

0.0159625385558279

Position on chromosome:

3:30733289-30733315

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,monDom5,galGal3

Binding area:

(Transcript)	5'	U___AU____AUAAGCUGUGUU_______C	3'
		_GUC___AGG____________AGCACUU_
		_\|\|\|___\|\|\|____________\|\|\|\|\|\|\|_
		_CAG___UCC____________UCGUGAA_
(miRNA)	3'	U___GUU___CU_________________A	5'

UTR3

7mer

251-273

0.0257921569012981

Position on chromosome:

3:30733343-30733365

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	UUUACA_________UAACAUUU_______	3'
		______AUAG_CCAA________GCACUUU
		______\|.\|\|_\|\|\|\|________\|\|\|\|\|\|\|
		______UGUC_GGUU________CGUGAAA
(miRNA)	3'	__________A____UCCCUU_________	5'

UTR3

6mer

546-572

0.0037731043164146

Position on chromosome:

3:30733638-30733664

Conserved species:

panTro2,bosTau4,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	C_________CUAU__CCACAUU______G	3'
		_ACAG_CCAG____GA_______GCACUU_
		_\|\|\|\|_\|\|\|.____\|\|_______\|\|\|\|\|\|_
		_UGUC_GGUU____CU_______CGUGAA_
(miRNA)	3'	_____A____UCC___U____________A	5'

UTR3

7mer

589-607

0.00489328892089151

Position on chromosome:

3:30733681-30733699

Conserved species:

panTro2

Binding area:

(Transcript)	5'	CAAAAUAAU__U___CUGCCU________C	3'
		_________CA_UCC_______AGCACUU_
		_________\|\|_\|\|\|_______\|\|\|\|\|\|\|_
		_________GU_AGG_______UCGUGAA_
(miRNA)	3'	________U__C___UUUCCCU_______A	5'

UTR3

6mer

803-808

0.00448900842563306

Position on chromosome:

3:30733895-30733900

Conserved species:

panTro2,rheMac2,loxAfr3

Binding area:

(Transcript)	5'	AAUACCUUGAAUGUUUUGAACCC______	3'
		_______________________CACUUU
		_______________________\|\|\|\|\|\|
		_______________________GUGAAA
(miRNA)	3'	______________________C______	5'

UTR3

6mer

905-916

0.0019693609257304

Position on chromosome:

3:30733997-30734008

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UUCUUUUUUUCAUCUU___CCU___________A	3'
		________________UCC________GCACUU_
		________________\|\|\|________\|\|\|\|\|\|_
		________________AGG________CGUGAA_
(miRNA)	3'	_______________C___UUUCCCUU______A	5'

UTR3

8mer

2415-2428

0.0772999828740662

Position on chromosome:

3:30735507-30735520

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,dasNov2,loxAfr3,monDom5,galGal3

Binding area:

(Transcript)	5'	CUUUUUAUAUCAAA_____C_____________A	3'
		______________AGUCU______AAGCACUU_
		______________\|\|\|\|.______\|\|\|\|\|\|\|\|_
		______________UCAGG______UUCGUGAA_
(miRNA)	3'	_____________G_____UUUCCC________A	5'

ENSG00000196233 (LCOR)

hsa-miR-520a-3p

0.998997196892476

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

571-596

0.0121823672224593

Position on chromosome:

10:98718747-98718772

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGU____UU_UAAUAUUC___U_________	3'
		___UAGU__G________AGG___GCACUUU
		___.\|\|\|__.________\|\|\|___\|\|\|\|\|\|\|
		___GUCA__U________UCC___CGUGAAA
(miRNA)	3'	__U____GG_U__________CUU_______	5'

UTR3

7mer

722-744

0.00941090679641495

Position on chromosome:

10:98718898-98718920

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GAUUUG___CUAUUCUGUAUU________	3'
		______CCA____________GGCACUUU
		______\|\|\|____________.\|\|\|\|\|\|\|
		______GGU____________UCGUGAAA
(miRNA)	3'	_____A___UUCCCU______________	5'

UTR3

6mer

1230-1235

0.00360710604175734

Position on chromosome:

10:98719406-98719411

Conserved species:

panTro2,rheMac2,rn4,mm9,bosTau4,echTel1

Binding area:

(Transcript)	5'	AAUUAUGUUUGUGAUGAGCUAUA______	3'
		_______________________CACUUU
		_______________________\|\|\|\|\|\|
		_______________________GUGAAA
(miRNA)	3'	______________________C______	5'

UTR3

6mer

1477-1497

0.00304091464672748

Position on chromosome:

10:98719653-98719673

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,echTel1

Binding area:

(Transcript)	5'	GUGUGUAU___C____UUU__UA_______	3'
		________UAG_UUUA___GG___CACUUU
		________.\|\|_\|..\|___\|\|___\|\|\|\|\|\|
		________GUC_AGGU___CC___GUGAAA
(miRNA)	3'	_______U________UUC__UUC______	5'

UTR3

6mer

2124-2147

0.00175366192829513

Position on chromosome:

10:98720300-98720323

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UGGCA____A_____AUUGUGCUC______	3'
		_____AUAG__CAGA_________CACUUU
		_____\|.\|\|__\|\|.\|_________\|\|\|\|\|\|
		_____UGUC__GUUU_________GUGAAA
(miRNA)	3'	_________AG____CCCUUC_________	5'

UTR3

9mer

2886-2905

0.0138685121200283

Position on chromosome:

10:98721062-98721081

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	AUCAAGAAA________AA_C_________	3'
		_________AG_CUAAA__G_AAGCACUUU
		_________\|\|_\|.\|\|\|__\|_\|\|\|\|\|\|\|\|\|
		_________UC_GGUUU__C_UUCGUGAAA
(miRNA)	3'	________G__A_____CC___________	5'

UTR3

8mer

3562-3586

0.0162599586753998

Position on chromosome:

10:98721738-98721762

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	GUAC___A_________UAAUUC________	3'
		____UAG___AAAGGGA______AGCACUUU
		____.\|\|___\|\|\|\|\|\|\|______\|\|\|\|\|\|\|\|
		____GUC___UUUCCCU______UCGUGAAA
(miRNA)	3'	___U___AGG_____________________	5'

UTR3

7mer

5665-5684

0.0648818241864575

Position on chromosome:

10:98723841-98723860

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	UGAUCAAU_____UGU__UA________A	3'
		________GUUUA___AG__GAGCACUU_
		________\|\|..\|___\|\|__.\|\|\|\|\|\|\|_
		________CAGGU___UC__UUCGUGAA_
(miRNA)	3'	_______U_____U____CC________A	5'

UTR3

7mer

267-288

0.00446627171384326

Position on chromosome:

10:98711889-98711910

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	AAGAAA______UGUGCU__C_______C	3'
		______AGUCCA______GG_AGCACUU_
		______\|\|\|\|\|\|______\|\|_\|\|\|\|\|\|\|_
		______UCAGGU______CC_UCGUGAA_
(miRNA)	3'	_____G______UUC_____U_______A	5'

ENSG00000124209 (RAB22A)

hsa-miR-520a-3p

0.998441451468194

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

319-346

0.0669843766314407

Position on chromosome:

20:56935079-56935106

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5,galGal3

Binding area:

(Transcript)	5'	A___UU_G________AAAUU________	3'
		_ACA__U_UAAAGGGA_____AGCACUUU
		_\|\|\|__\|_.\|\|\|\|\|\|\|_____\|\|\|\|\|\|\|\|
		_UGU__A_GUUUCCCU_____UCGUGAAA
(miRNA)	3'	____C__G_____________________	5'

UTR3

9mer

532-549

0.0322424656987566

Position on chromosome:

20:56935292-56935309

Conserved species:

panTro2,rheMac2,rn4,mm9,canFam2,dasNov2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUCAUCUCUG___UCUCUA_________	3'
		___________CCA______AAGCACUUU
		___________\|\|\|______\|\|\|\|\|\|\|\|\|
		___________GGU______UUCGUGAAA
(miRNA)	3'	__________A___UUCCC__________	5'

UTR3

7mer

1040-1066

0.00660758384818487

Position on chromosome:

20:56935800-56935826

Conserved species:

panTro2,rn4,oryCun2,canFam2

Binding area:

(Transcript)	5'	U___AUUGUA______UAUA________A	3'
		_GGU______UAAAGG____GAGCACUU_
		_.\|\|______.\|\|\|\|\|____.\|\|\|\|\|\|\|_
		_UCA______GUUUCC____UUCGUGAA_
(miRNA)	3'	G___G___________C___________A	5'

UTR3

7mer

3114-3131

0.0023126627756506

Position on chromosome:

20:56937874-56937891

Conserved species:

panTro2

Binding area:

(Transcript)	5'	GUCCCUGUUUC___UU_U_UAC_______	3'
		___________CCA__G_G___GCACUUU
		___________\|\|\|__\|_\|___\|\|\|\|\|\|\|
		___________GGU__C_C___CGUGAAA
(miRNA)	3'	__________A___UU_C_UU________	5'

UTR3

6mer

6329-6356

0.00171274841649091

Position on chromosome:

20:56941089-56941116

Conserved species:

panTro2,rheMac2,loxAfr3

Binding area:

(Transcript)	5'	G________UCUUUCCAUCAUUU______	3'
		_CAGUUCAG______________CACUUU
		_\|\|\|\|.\|\|.______________\|\|\|\|\|\|
		_GUCAGGUU______________GUGAAA
(miRNA)	3'	U________UCCCUUC_____________	5'

UTR3

6mer

7700-7718

0.00646774498721277

Position on chromosome:

20:56942460-56942478

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UUUAGCUUGA___U____UAAUA_________	3'
		__________AUA_UCUA________CACUUU
		__________\|.\|_\|\|.\|________\|\|\|\|\|\|
		__________UGU_AGGU________GUGAAA
(miRNA)	3'	_____________C____UUCCCUUC______	5'

ENSG00000169967 (MAP3K2)

hsa-miR-520a-3p

0.998251596142525

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

8778-8799

0.0204585664119231

Position on chromosome:

2:128065084-128065105

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	UUCAUUC__CU___CUCUGACU_______	3'
		_______AC__UCU________GCACUUU
		_______\|\|__\|\|.________\|\|\|\|\|\|\|
		_______UG__AGG________CGUGAAA
(miRNA)	3'	_________UC___UUUCCCUU_______	5'

UTR3

9mer

8578-8600

0.065001204114139

Position on chromosome:

2:128064884-128064906

Conserved species:

panTro2,rheMac2,mm9,oryCun2,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	UGAUGU_________A_AUA_________	3'
		______GGUUCAGAG_G___AAGCACUUU
		______.\|\|.\|\|.\|\|_\|___\|\|\|\|\|\|\|\|\|
		______UCAGGUUUC_C___UUCGUGAAA
(miRNA)	3'	_____G___________C___________	5'

UTR3

8mer

5501-5508

0.00879938268259936

Position on chromosome:

2:128061807-128061814

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2

Binding area:

(Transcript)	5'	AUGAAUAUCUUGAAAAUUUUC________	3'
		_____________________AGCACUUU
		_____________________\|\|\|\|\|\|\|\|
		_____________________UCGUGAAA
(miRNA)	3'	____________________U________	5'

UTR3

9mer

2290-2303

0.0201866112663505

Position on chromosome:

2:128058596-128058609

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AAGUUCAUGACCAUA_________________	3'
		_______________CCGAA___AAGCACUUU
		_______________\|\|.\|\|___\|\|\|\|\|\|\|\|\|
		_______________GGUUU___UUCGUGAAA
(miRNA)	3'	______________A_____CCC_________	5'

ENSG00000005469 (CROT)

hsa-miR-520a-3p

0.998126749044165

Gene details
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miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

9mer

372-394

0.0597690138417661

Position on chromosome:

7:87028333-87028355

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,dasNov2,echTel1

Binding area:

(Transcript)	5'	CAAUGU_G______UCUUUC_________	3'
		______A_AGUCCA______AAGCACUUU
		______\|_\|\|\|\|\|\|______\|\|\|\|\|\|\|\|\|
		______U_UCAGGU______UUCGUGAAA
(miRNA)	3'	_______G______UUCCC__________	5'

UTR3

8mer

569-587

0.0089114194888603

Position on chromosome:

7:87028530-87028548

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GUGGCUCAUG__UAUAAUCUU________	3'
		__________CC_________AGCACUUU
		__________\|\|_________\|\|\|\|\|\|\|\|
		__________GG_________UCGUGAAA
(miRNA)	3'	_________A__UUUCCCU__________	5'

UTR3

8mer

966-984

0.0446360102320843

Position on chromosome:

7:87028927-87028945

Conserved species:

panTro2,rheMac2,canFam2

Binding area:

(Transcript)	5'	GUUUUGUGA____AA____UA_________A	3'
		_________AUAG___AAA___AAGCACUU_
		_________\|.\|\|___\|\|\|___\|\|\|\|\|\|\|\|_
		_________UGUC___UUU___UUCGUGAA_
(miRNA)	3'	_____________AGG___CCC________A	5'

ENSG00000121871 (SLITRK3)

hsa-miR-520a-3p

0.998086321084885

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

229-255

0.0226276431781363

Position on chromosome:

3:164904737-164904763

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,danRer6

Binding area:

(Transcript)	5'	CA__A___UUU__A___CAUCU_______	3'
		__AG_UUU___GG_GAA_____GCACUUU
		__\|\|_\|..___\|\|_\|\|\|_____\|\|\|\|\|\|\|
		__UC_AGG___CC_CUU_____CGUGAAA
(miRNA)	3'	_G______UUU__________________	5'

UTR3

9mer

158-179

0.0903391603576847

Position on chromosome:

3:164904666-164904687

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,danRer6

Binding area:

(Transcript)	5'	AUCACUA____C_UU_UA____________	3'
		_______ACAG_U__G___GGAAGCACUUU
		_______\|\|\|\|_\|__.___\|\|\|\|\|\|\|\|\|\|\|
		_______UGUC_A__U___CCUUCGUGAAA
(miRNA)	3'	_____________GG_UUC___________	5'

ENSG00000139132 (FGD4)

hsa-miR-520a-3p

0.998079959629562

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

69-87

0.0376569909523086

Position on chromosome:

12:32793537-32793555

Conserved species:

panTro2,rheMac2,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGCUCUUCUU___CA__UGCU___________	3'
		__________ACA__UC_______AGCACUUU
		__________\|\|\|__.\|_______\|\|\|\|\|\|\|\|
		__________UGU__GG_______UCGUGAAA
(miRNA)	3'	_____________CA__UUUCCCU________	5'

UTR3

7mer

287-309

0.0108557326310506

Position on chromosome:

12:32793755-32793777

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UGUCA___UC___UUAGAAU________C	3'
		_____CCG__AGG_______GAGCACUU_
		_____\|\|.__\|\|\|_______.\|\|\|\|\|\|\|_
		_____GGU__UCC_______UUCGUGAA_
(miRNA)	3'	____A___U____C______________A	5'

UTR3

6mer

1400-1421

0.0037730694048017

Position on chromosome:

12:32794868-32794889

Conserved species:

panTro2,rheMac2,rn4,mm9,canFam2

Binding area:

(Transcript)	5'	UACUGUC___CC_____CAUUGU______	3'
		_______AUA__CCAAA______CACUUU
		_______\|.\|__\|\|\|\|\|______\|\|\|\|\|\|
		_______UGU__GGUUU______GUGAAA
(miRNA)	3'	__________CA_____CCCUUC______	5'

UTR3

6mer

1983-2003

0.00120080146729389

Position on chromosome:

12:32795451-32795471

Conserved species:

panTro2,canFam2

Binding area:

(Transcript)	5'	UAUUUUUA____CAA____ACUA______	3'
		________AAAG___GAAG____CACUUU
		________\|\|\|\|___\|\|\|\|____\|\|\|\|\|\|
		________UUUC___CUUC____GUGAAA
(miRNA)	3'	_______G____C________________	5'

UTR3

6mer

2190-2208

0.00187143083133534

Position on chromosome:

12:32795658-32795676

Conserved species:

panTro2,rheMac2,loxAfr3

Binding area:

(Transcript)	5'	UCUGGUUAUC_____ACCAUAUU________	3'
		__________CGGUC__________CACUUU
		__________\|.\|\|\|__________\|\|\|\|\|\|
		__________GUCAG__________GUGAAA
(miRNA)	3'	_________U_____GUUUCCCUUC______	5'

UTR3

8mer

4989-5016

0.00472273428575813

Position on chromosome:

12:32798457-32798484

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	G___C___UGCCUGUAAUCCC________	3'
		_UAG_CCA_____________AGCACUUU
		_.\|\|_\|\|\|_____________\|\|\|\|\|\|\|\|
		_GUC_GGU_____________UCGUGAAA
(miRNA)	3'	U___A___UUCCCU_______________	5'

UTR3

9mer

5438-5459

0.0544344581955785

Position on chromosome:

12:32798906-32798927

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	AUUGGAA___U_G____AUU_________	3'
		_______ACA_U_UAAA___AAGCACUUU
		_______\|\|\|_\|_.\|\|\|___\|\|\|\|\|\|\|\|\|
		_______UGU_A_GUUU___UUCGUGAAA
(miRNA)	3'	__________C_G____CCC_________	5'

UTR3

7mer

188-211

0.0059136901858972

Position on chromosome:

12:32734990-32735013

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	CUCA___AAAAC___UCUCCC________G	3'
		____ACA_____UCC_______AGCACUU_
		____\|\|\|_____\|\|\|_______\|\|\|\|\|\|\|_
		____UGU_____AGG_______UCGUGAA_
(miRNA)	3'	_______C_______UUUCCCU_______A	5'

ENSG00000003137 (CYP26B1)

hsa-miR-520a-3p

0.997609192486245

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

9mer

470-494

0.0335823342987852

Position on chromosome:

2:72356837-72356861

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,galGal3,xenTro2

Binding area:

(Transcript)	5'	UGCC____GCUUG____UU__________	3'
		____ACGG_____CAGA__GAAGCACUUU
		____\|\|.\|_____\|\|.\|__\|\|\|\|\|\|\|\|\|\|
		____UGUC_____GUUU__CUUCGUGAAA
(miRNA)	3'	________AG_______CC__________	5'

UTR3

8mer

178-205

0.0757384312155933

Position on chromosome:

2:72356545-72356572

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,galGal3,xenTro2,danRer6

Binding area:

(Transcript)	5'	______GUUU___UAUUGAAA________G	3'
		_CAGUC____UAA________AAGCACUU_
		_\|\|\|\|\|____.\|\|________\|\|\|\|\|\|\|\|_
		_GUCAG____GUU________UUCGUGAA_
(miRNA)	3'	U____________UCCC____________A	5'

ENSG00000205572 (SERF1B)

hsa-miR-520a-3p

0.997310316105188

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

167-186

0.0465467543068561

Position on chromosome:

5:69337735-69337754

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UAGGAAACU___A_G___CUU__________	3'
		_________UAG_U_UAA_____AGCACUUU
		_________.\|\|_\|_.\|\|_____\|\|\|\|\|\|\|\|
		_________GUC_A_GUU_____UCGUGAAA
(miRNA)	3'	________U_____G___UCCCU________	5'

UTR3

8mer

635-662

0.0485770335738621

Position on chromosome:

5:69338203-69338230

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	C____C__CC___CCAUAAUUU________	3'
		_ACAG_CC___GG_________AGCACUUU
		_\|\|\|\|_\|\|___\|\|_________\|\|\|\|\|\|\|\|
		_UGUC_GG___CC_________UCGUGAAA
(miRNA)	3'	_____A__UUU__CU_______________	5'

UTR3

8mer

704-722

0.0122668857368425

Position on chromosome:

5:69338272-69338290

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GUGGCUCAUG__UGUAAUCU_________	3'
		__________CC________GAGCACUUU
		__________\|\|________.\|\|\|\|\|\|\|\|
		__________GG________UUCGUGAAA
(miRNA)	3'	_________A__UUUCCC___________	5'

ENSG00000009413 (REV3L)

hsa-miR-520a-3p

0.996470254337596

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

10117-10135

0.0396281912281637

Position on chromosome:

6:111737554-111737572

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	GAUGGCAUU____A____CA__________A	3'
		_________CAGU_UCGA____GAGCACUU_
		_________\|\|\|\|_.\|.\|____.\|\|\|\|\|\|\|_
		_________GUCA_GGUU____UUCGUGAA_
(miRNA)	3'	________U_________UCCC________A	5'

UTR3

8mer

8511-8525

0.0215886346660952

Position on chromosome:

6:111697691-111697705

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,galGal3

Binding area:

(Transcript)	5'	GUCACUUCUUUUA____C_A________A	3'
		_____________CAAA_G_AAGCACUU_
		_____________\|\|\|\|_\|_\|\|\|\|\|\|\|\|_
		_____________GUUU_C_UUCGUGAA_
(miRNA)	3'	____________G____C_C________A	5'

UTR3

6mer

7681-7707

0.0047155981446693

Position on chromosome:

6:111696861-111696887

Conserved species:

panTro2,rheMac2,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	CC____AUGGU____U__ACUGU______	3'
		__ACAG_____UUUA_AG_____CACUUU
		__\|\|\|\|_____\|..\|_\|\|_____\|\|\|\|\|\|
		__UGUC_____AGGU_UC_____GUGAAA
(miRNA)	3'	_______________U__CCUUC______	5'

UTR3

9mer

5859-5875

0.013678628507073

Position on chromosome:

6:111695039-111695055

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AGAAGCAAUUUC___AA_________________	3'
		____________ACA__CCA_____AAGCACUUU
		____________\|\|\|__\|\|\|_____\|\|\|\|\|\|\|\|\|
		____________UGU__GGU_____UUCGUGAAA
(miRNA)	3'	_______________CA___UUCCC_________	5'

UTR3

7mer

3222-3234

0.00413789703468247

Position on chromosome:

6:111678245-111678257

Conserved species:

panTro2,rheMac2,canFam2,dasNov2,echTel1

Binding area:

(Transcript)	5'	CACCUAUGCUGCUGAU___A__________	3'
		________________GAG__AGGCACUUU
		________________.\|\|__\|.\|\|\|\|\|\|\|
		________________UUC__UUCGUGAAA
(miRNA)	3'	_______________U___CC_________	5'

UTR3

6mer

579-590

0.0107569635417138

Position on chromosome:

6:111620813-111620824

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	CGUGUUACUUCGAGAUA____UU____________	3'
		_________________UCCA________CACUUU
		_________________\|\|\|\|________\|\|\|\|\|\|
		_________________AGGU________GUGAAA
(miRNA)	3'	________________C____UUCCCUUC______	5'

UTR3

6mer

542-547

0.00842866712951109

Position on chromosome:

6:111620776-111620781

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	GACUGCAAAAUAUUUUGUAAAUA______	3'
		_______________________CACUUU
		_______________________\|\|\|\|\|\|
		_______________________GUGAAA
(miRNA)	3'	______________________C______	5'

ENSG00000048649 (RSF1)

hsa-miR-520a-3p

0.996163495954003

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

6522-6549

0.0539969588001954

Position on chromosome:

11:77377563-77377590

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	____AA_UU____GUGGGUGA________G	3'
		_CAG__U__AGGG________AAGCACUU_
		_\|\|\|__.__\|\|\|\|________\|\|\|\|\|\|\|\|_
		_GUC__G__UCCC________UUCGUGAA_
(miRNA)	3'	U___AG_UU____________________A	5'

UTR3

7mer

5433-5455

0.00883595153659957

Position on chromosome:

11:77376474-77376496

Conserved species:

panTro2,rheMac2,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	CCAUA___UU__A_____U_U_______G	3'
		_____ACA__GU_CAGAG_G_AGCACUU_
		_____\|\|\|__\|\|_\|\|.\|\|_\|_\|\|\|\|\|\|\|_
		_____UGU__CA_GUUUC_C_UCGUGAA_
(miRNA)	3'	____________G_____C_U_______A	5'

UTR3

8mer

5227-5246

0.0279833954063725

Position on chromosome:

11:77376268-77376287

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5,galGal3

Binding area:

(Transcript)	5'	GUGCUAGU____G__U__UA________C	3'
		________CAGU_UA_AG__AAGCACUU_
		________\|\|\|\|_.\|_\|\|__\|\|\|\|\|\|\|\|_
		________GUCA_GU_UC__UUCGUGAA_
(miRNA)	3'	_______U____G__U__CC________A	5'

UTR3

6mer

5054-5080

0.00439591006118906

Position on chromosome:

11:77376095-77376121

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UU_____UU_UUUUGUUUUGUUU______	3'
		__GUUCG__G_____________CACUUU
		__\|\|.\|.__\|_____________\|\|\|\|\|\|
		__CAGGU__C_____________GUGAAA
(miRNA)	3'	_U_____UU_CCUUC______________	5'

UTR3

6mer

2413-2439

0.00212236381013645

Position on chromosome:

11:77373454-77373480

Conserved species:

panTro2,rheMac2,oryCun2

Binding area:

(Transcript)	5'	AC__C_______UAUACACUCAC______	3'
		__CA_UUUAGAG___________CACUUU
		__\|\|_\|..\|.\|\|___________\|\|\|\|\|\|
		__GU_AGGUUUC___________GUGAAA
(miRNA)	3'	_U__C_______CCUUC____________	5'

UTR3

6mer

2289-2307

0.00207388390159053

Position on chromosome:

11:77373330-77373348

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,loxAfr3

Binding area:

(Transcript)	5'	UUUUUUUCCU____UAUUUAUAC______	3'
		__________UUCA_________CACUUU
		__________\|.\|\|_________\|\|\|\|\|\|
		__________AGGU_________GUGAAA
(miRNA)	3'	_________C____UUCCCUUC_______	5'

UTR3

6mer

1224-1251

0.00215904957273828

Position on chromosome:

11:77372265-77372292

Conserved species:

panTro2,rn4,mm9,oryCun2,dasNov2

Binding area:

(Transcript)	5'	A__CUG___U____UUGUGUGUA______	3'
		_AC___CCA_GAGG_________CACUUU
		_\|\|___\|\|\|_.\|\|\|_________\|\|\|\|\|\|
		_UG___GGU_UUCC_________GUGAAA
(miRNA)	3'	___UCA________CUUC___________	5'

ENSG00000165566 (AMER2)

hsa-miR-520a-3p

0.994722855982549

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

9mer

7670-7698

0.0440409540897693

Position on chromosome:

13:25743492-25743520

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	______CU___AAUUAUUUUC_________	3'
		_AGUCC__GAG__________AAGCACUUU
		_\|\|\|\|\|__.\|\|__________\|\|\|\|\|\|\|\|\|
		_UCAGG__UUC__________UUCGUGAAA
(miRNA)	3'	G_____U____CC_________________	5'

UTR3

6mer

5289-5294

0.00186870536000536

Position on chromosome:

13:25741111-25741116

Conserved species:

panTro2

Binding area:

(Transcript)	5'	UUUCUUUUAAAAUUUAUAUUUUC______	3'
		_______________________CACUUU
		_______________________\|\|\|\|\|\|
		_______________________GUGAAA
(miRNA)	3'	______________________C______	5'

UTR3

8mer

1403-1419

0.00578186177950508

Position on chromosome:

13:25737225-25737241

Conserved species:

panTro2

Binding area:

(Transcript)	5'	CAAUUCUGAAC______AAU________G	3'
		___________UUCAGA___AAGCACUU_
		___________\|.\|\|.\|___\|\|\|\|\|\|\|\|_
		___________AGGUUU___UUCGUGAA_
(miRNA)	3'	__________C______CCC________A	5'

UTR3

8mer

100-123

0.0446415030301927

Position on chromosome:

13:25735922-25735945

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AUGUA__AAG__U_____CUAAU________	3'
		_____AG___CU___GGG_____AGCACUUU
		_____\|\|___\|.___\|\|\|_____\|\|\|\|\|\|\|\|
		_____UC___GG___CCC_____UCGUGAAA
(miRNA)	3'	____G__A____UUU___U____________	5'

ENSG00000150457 (LATS2)

hsa-miR-520a-3p

0.993581545517501

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

1670-1685

0.00335517287497734

Position on chromosome:

13:21548841-21548856

Conserved species:

panTro2

Binding area:

(Transcript)	5'	UCACCAAGAAAAC_____CA___________	3'
		_____________CCAAA__GGA__CACUUU
		_____________\|\|\|\|\|__\|\|\|__\|\|\|\|\|\|
		_____________GGUUU__CCU__GUGAAA
(miRNA)	3'	____________A_____C____UC______	5'

UTR3

7mer

1570-1589

0.0529855621815083

Position on chromosome:

13:21548741-21548760

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AAUUUAGU__________AA_________A	3'
		________ACAGUUUAGA___GAGCACUU_
		________\|\|\|\|\|..\|.\|___.\|\|\|\|\|\|\|_
		________UGUCAGGUUU___UUCGUGAA_
(miRNA)	3'	__________________CCC________A	5'

UTR3

7mer

1470-1481

0.0328012098784963

Position on chromosome:

13:21548641-21548652

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,monDom5,galGal3

Binding area:

(Transcript)	5'	CUACAUUUGUAUUUUA____U____________A	3'
		________________UCCA______AGCACUU_
		________________\|\|\|\|______\|\|\|\|\|\|\|_
		________________AGGU______UCGUGAA_
(miRNA)	3'	_______________C____UUCCCU_______A	5'

UTR3

6mer

666-685

0.00397229639434743

Position on chromosome:

13:21547837-21547856

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	ACUGAGUGA_____U__UUCUCU______	3'
		_________UCUAA_GG______CACUUU
		_________\|\|.\|\|_\|\|______\|\|\|\|\|\|
		_________AGGUU_CC______GUGAAA
(miRNA)	3'	________C_____U__CUUC________	5'

ENSG00000136160 (EDNRB)

hsa-miR-520a-3p

0.993389710562883

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

2488-2503

0.060598946770944

Position on chromosome:

13:78472104-78472119

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UUAAGAAAGCCU_____GU_____________A	3'
		____________C_GUC__GA___AAGCACUU_
		____________\|_\|\|\|__.\|___\|\|\|\|\|\|\|\|_
		____________G_CAG__UU___UUCGUGAA_
(miRNA)	3'	___________U_U___GU__CCC________A	5'

UTR3

7mer

2467-2479

0.0284777598228452

Position on chromosome:

13:78472083-78472095

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGCACUUAAUUUUUU_____________________C	3'
		_______________ACAGUU________AGCACUU_
		_______________\|\|\|\|\|.________\|\|\|\|\|\|\|_
		_______________UGUCAG________UCGUGAA_
(miRNA)	3'	_____________________GUUUCCCU_______A	5'

UTR3

6mer

2104-2109

0.00355304809255321

Position on chromosome:

13:78471720-78471725

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	AAGGCUGUUUUUGAAAAUCAUUA______	3'
		_______________________CACUUU
		_______________________\|\|\|\|\|\|
		_______________________GUGAAA
(miRNA)	3'	______________________C______	5'

ENSG00000117289 (TXNIP)

hsa-miR-520a-3p

0.993178218618565

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

52-68

0.00630675014646706

Position on chromosome:

1:145441271-145441287

Conserved species:

panTro2,rheMac2,dasNov2

Binding area:

(Transcript)	5'	UUUUGUCUCUCU___U______CACU______	3'
		____________UCC____GGA____CACUUU
		____________\|\|\|____\|\|\|____\|\|\|\|\|\|
		____________AGG____CCU____GUGAAA
(miRNA)	3'	___________C___UUUC___UC________	5'

UTR3

6mer

492-514

0.00369346958835269

Position on chromosome:

1:145441711-145441733

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	AAAAU___UGUU___CCUUUGU_______G	3'
		_____CAG____UCC________GCACUU_
		_____\|\|\|____\|\|\|________\|\|\|\|\|\|_
		_____GUC____AGG________CGUGAA_
(miRNA)	3'	____U__________UUUCCCUU______A	5'

UTR3

8mer

777-801

0.0337821904673163

Position on chromosome:

1:145441996-145442020

Conserved species:

panTro2,rheMac2,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UGAU_______U__UGUUCUU________	3'
		____UCUAAGG_GA_______AGCACUUU
		____\|\|.\|\|.\|_\|\|_______\|\|\|\|\|\|\|\|
		____AGGUUUC_CU_______UCGUGAAA
(miRNA)	3'	___C_______C_________________	5'

UTR3

7mer

1155-1170

0.00931013138235254

Position on chromosome:

1:145442374-145442389

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UGGCCCCUCACU____CUG________________G	3'
		____________GCAG___CC_______AGCACUU_
		____________.\|\|\|___\|\|_______\|\|\|\|\|\|\|_
		____________UGUC___GG_______UCGUGAA_
(miRNA)	3'	________________A____UUUCCCU_______A	5'

UTR3

8mer

1174-1198

0.0390190098864033

Position on chromosome:

1:145442393-145442417

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UGGU_____ACUCUC__CCAU________	3'
		____CAGUC______AG____AGCACUUU
		____\|\|\|\|\|______\|\|____\|\|\|\|\|\|\|\|
		____GUCAG______UC____UCGUGAAA
(miRNA)	3'	___U_____GUU_____CCU_________	5'

ENSG00000107105 (ELAVL2)

hsa-miR-520a-3p

0.993153452629568

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

405-429

0.0263079709703469

Position on chromosome:

9:23690507-23690531

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UAUU___AAA____UU__CUU________	3'
		____CAG___UCAA__GG___AGCACUUU
		____\|\|\|___.\|\|\|__\|\|___\|\|\|\|\|\|\|\|
		____GUC___GGUU__CC___UCGUGAAA
(miRNA)	3'	___U___A______UC__U__________	5'

UTR3

6mer

198-225

0.0100725354971099

Position on chromosome:

9:23690300-23690327

Conserved species:

panTro2,rheMac2,rn4,oryCun2,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	G______CAU_CAAAUUGUGCUU______	3'
		_AGAGGG___G____________CACUUU
		_\|.\|\|\|\|___\|____________\|\|\|\|\|\|
		_UUUCCC___C____________GUGAAA
(miRNA)	3'	G______UU____________________	5'

UTR3

7mer

176-197

0.0556714093504646

Position on chromosome:

9:23690278-23690299

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	CACUUU_____G_UUUAUCA________A	3'
		______ACAGU_U_______GAGCACUU_
		______\|\|\|\|\|_._______.\|\|\|\|\|\|\|_
		______UGUCA_G_______UUCGUGAA_
(miRNA)	3'	___________G_UUUCCC_________A	5'

ENSG00000188211 (NCR3LG1)

hsa-miR-520a-3p

0.99253012368015

Gene details
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miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

823-846

0.00460445198999822

Position on chromosome:

11:17394883-17394906

Conserved species:

panTro2

Binding area:

(Transcript)	5'	GCUA____U_U__CAAACUA________C	3'
		____CCAA_G_GG_______GGGCACUU_
		____\|\|\|\|_\|_\|\|_______..\|\|\|\|\|\|_
		____GGUU_C_CC_______UUCGUGAA_
(miRNA)	3'	___A____U___________________A	5'

UTR3

6mer

1434-1455

0.00574891125762424

Position on chromosome:

11:17395494-17395515

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GUCUGGA____CCUC____AUCC______	3'
		_______UCCA____AAGG____CACUUU
		_______\|\|\|\|____\|\|\|\|____\|\|\|\|\|\|
		_______AGGU____UUCC____GUGAAA
(miRNA)	3'	______C____________CUUC______	5'

UTR3

6mer

2826-2844

0.00721915076762281

Position on chromosome:

11:17396886-17396904

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	CCCUAGAAAA______CU___CC______	3'
		__________UCCAGA__GGA__CACUUU
		__________\|\|\|\|.\|__\|\|\|__\|\|\|\|\|\|
		__________AGGUUU__CCU__GUGAAA
(miRNA)	3'	_________C______C____UC______	5'

UTR3

7mer

2972-2985

0.00996245871121696

Position on chromosome:

11:17397032-17397045

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UGAGCUGAUCCCUC__A_______________G	3'
		______________UC_CAAG____AGCACUU_
		______________\|\|_\|\|\|.____\|\|\|\|\|\|\|_
		______________AG_GUUU____UCGUGAA_
(miRNA)	3'	_____________C_______CCCU_______A	5'

UTR3

6mer

3782-3803

0.00380965975365383

Position on chromosome:

11:17397842-17397863

Conserved species:

panTro2

Binding area:

(Transcript)	5'	UACUAAU_____AAAUAAUUCCU______	3'
		_______UAGUU___________CACUUU
		_______.\|\|\|.___________\|\|\|\|\|\|
		_______GUCAG___________GUGAAA
(miRNA)	3'	______U_____GUUUCCCUUC_______	5'

UTR3

8mer

4712-4723

0.0592729093068277

Position on chromosome:

11:17398772-17398783

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GUGGCUUACGACUGUAA___C______________	3'
		_________________UCC_______AGCACUUU
		_________________\|\|\|_______\|\|\|\|\|\|\|\|
		_________________AGG_______UCGUGAAA
(miRNA)	3'	________________C___UUUCCCU________	5'

ENSG00000134323 (MYCN)

hsa-miR-520a-3p

0.99217397650601

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

667-689

0.0132160572699785

Position on chromosome:

2:16086887-16086909

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,galGal3,xenTro2

Binding area:

(Transcript)	5'	GUUUUG___AGA__UUACUUUAU______	3'
		______AGU___UA_________CACUUU
		______\|\|\|___.\|_________\|\|\|\|\|\|
		______UCA___GU_________GUGAAA
(miRNA)	3'	_____G___G____UUCCCUUC_______	5'

UTR3

8mer

841-864

0.0766343816242933

Position on chromosome:

2:16087061-16087084

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	AUAUU____G_UGCAUCUUAU________	3'
		_____UAGU_C__________AGCACUUU
		_____.\|\|\|_\|__________\|\|\|\|\|\|\|\|
		_____GUCA_G__________UCGUGAAA
(miRNA)	3'	____U____G_UUUCCCU___________	5'

ENSG00000133606 (MKRN1)

hsa-miR-520a-3p

0.992027704914914

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

955-972

0.00541225241419732

Position on chromosome:

7:140153795-140153812

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UACCCUGUAA___CUACCACGU______G	3'
		__________UCC_________GCACUU_
		__________\|\|\|_________\|\|\|\|\|\|_
		__________AGG_________CGUGAA_
(miRNA)	3'	_________C___UUUCCCUU_______A	5'

UTR3

7mer

465-488

0.0113000794858973

Position on chromosome:

7:140153305-140153328

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	CGAUC___CCUU_____UAC__________	3'
		_____UAG____UCCAG____AGGCACUUU
		_____.\|\|____\|\|\|\|.____\|.\|\|\|\|\|\|\|
		_____GUC____AGGUU____UUCGUGAAA
(miRNA)	3'	____U____________UCCC_________	5'

UTR3

6mer

105-133

0.0108495285193184

Position on chromosome:

7:140152945-140152973

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,dasNov2,loxAfr3,monDom5,galGal3

Binding area:

(Transcript)	5'	____UU_____UCCCACCCAUUCUUU______	3'
		_UCC____GGA_______________CACUUU
		_\|\|\|____\|\|\|_______________\|\|\|\|\|\|
		_AGG____CCU_______________GUGAAA
(miRNA)	3'	C___UUUC___UC___________________	5'

UTR3

9mer

37-64

0.0619835133010533

Position on chromosome:

7:140152877-140152904

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,canFam2,dasNov2,loxAfr3,monDom5,galGal3

Binding area:

(Transcript)	5'	U____CUG__CUUUUGUAA__________	3'
		_GCAG___CC_________GAAGCACUUU
		_.\|\|\|___\|\|_________\|\|\|\|\|\|\|\|\|\|
		_UGUC___GG_________CUUCGUGAAA
(miRNA)	3'	_____A____UUUCC______________	5'

ENSG00000150938 (CRIM1)

hsa-miR-520a-3p

0.991743801822576

Gene details
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miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

58-80

0.0148632339151896

Position on chromosome:

2:36775903-36775925

Conserved species:

panTro2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	UAAAA___AAA_____AUUUGU______G	3'
		_____AGU___CUAGA______GCACUU_
		_____\|\|\|___\|.\|.\|______\|\|\|\|\|\|_
		_____UCA___GGUUU______CGUGAA_
(miRNA)	3'	____G___________CCCUU_______A	5'

UTR3

6mer

160-181

0.00686038771855073

Position on chromosome:

2:36776005-36776026

Conserved species:

panTro2,rheMac2,dasNov2,loxAfr3,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	GCAAUGU____AA____CAUUCC______	3'
		_______GCAG__CAAG______CACUUU
		_______.\|\|\|__\|\|\|.______\|\|\|\|\|\|
		_______UGUC__GUUU______GUGAAA
(miRNA)	3'	___________AG____CCCUUC______	5'

UTR3

6mer

658-670

0.00359205630627936

Position on chromosome:

2:36776503-36776515

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	GUUAUUAAGGAUAUAU______A_______________	3'
		________________ACAGUU__________CACUUU
		________________\|\|\|\|\|.__________\|\|\|\|\|\|
		________________UGUCAG__________GUGAAA
(miRNA)	3'	______________________GUUUCCCUUC______	5'

UTR3

8mer

1660-1676

0.0531092152810013

Position on chromosome:

2:36777505-36777521

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,xenTro2

Binding area:

(Transcript)	5'	GUAACUUUUCAA____C__UU_____________	3'
		____________ACAG_CC_______AGCACUUU
		____________\|\|\|\|_\|\|_______\|\|\|\|\|\|\|\|
		____________UGUC_GG_______UCGUGAAA
(miRNA)	3'	________________A__UUUCCCU________	5'

UTR3

6mer

2308-2324

0.0105438982866876

Position on chromosome:

2:36778153-36778169

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UGAAGAAUAAA____A___UAU__________G	3'
		___________AUAG__UA______GGCACUU_
		___________\|.\|\|__.\|______.\|\|\|\|\|\|_
		___________UGUC__GU______UCGUGAA_
(miRNA)	3'	_______________AG__UUCCCU_______A	5'

ENSG00000110851 (PRDM4)

hsa-miR-520a-3p

0.991555474270341

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1197-1222

0.0885970632447812

Position on chromosome:

12:108127840-108127865

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	AA____A__U_____AAUGAAUA________A	3'
		__ACAG__C___GGG________AAGCACUU_
		__\|\|\|\|__\|___\|\|\|________\|\|\|\|\|\|\|\|_
		__UGUC__G___CCC________UUCGUGAA_
(miRNA)	3'	______AG_UUU___________________A	5'

ENSG00000198780 (FAM169A)

hsa-miR-520a-3p

0.991472989954698

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

5110-5130

0.0531603005735202

Position on chromosome:

5:74100991-74101011

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	CACCAGA___UUA_____A_________A	3'
		_______GCA___CAAAG_GAAGCACUU_
		_______.\|\|___\|\|\|\|\|_\|\|\|\|\|\|\|\|\|_
		_______UGU___GUUUC_CUUCGUGAA_
(miRNA)	3'	__________CAG_____C_________A	5'

UTR3

8mer

5094-5115

0.0106618964439714

Position on chromosome:

5:74100425;74100981-74100430;74100996

Conserved species:

panTro2

Binding area:

(Transcript)	5'	AAGAGAA___C_UA___UUCU________	3'
		_______GCA_U__AAA____AGCACUUU
		_______.\|\|_\|__\|\|\|____\|\|\|\|\|\|\|\|
		_______UGU_A__UUU____UCGUGAAA
(miRNA)	3'	__________C_GG___CCCU________	5'

UTR3

8mer

4953-4972

0.0132212705166817

Position on chromosome:

5:74097421-74097440

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,dasNov2

Binding area:

(Transcript)	5'	UCUCUAAA__AUG__UUU__C________C	3'
		________AG___CC____G_AAGCACUU_
		________\|\|___\|\|____\|_\|\|\|\|\|\|\|\|_
		________UC___GG____C_UUCGUGAA_
(miRNA)	3'	_______G__A____UUUC_C________A	5'

UTR3

6mer

2428-2441

0.00264462905744851

Position on chromosome:

5:74075827-74075840

Conserved species:

panTro2,rheMac2,oryCun2,loxAfr3

Binding area:

(Transcript)	5'	AAUAUUAUGUGUAC_____UUU________A	3'
		______________UCAAA_____GCACUU_
		______________.\|\|\|\|_____\|\|\|\|\|\|_
		______________GGUUU_____CGUGAA_
(miRNA)	3'	_____________A_____CCCUU______A	5'

UTR3

9mer

2096-2122

0.00587117577986351

Position on chromosome:

5:74075495-74075521

Conserved species:

panTro2,canFam2,dasNov2

Binding area:

(Transcript)	5'	UU__U______U_AAAAUUA_________	3'
		__CA_UCUAAA_G_______AAGCACUUU
		__\|\|_\|\|.\|\|\|_\|_______\|\|\|\|\|\|\|\|\|
		__GU_AGGUUU_C_______UUCGUGAAA
(miRNA)	3'	_U__C______C_C_______________	5'

UTR3

6mer

1202-1217

0.00287756166440619

Position on chromosome:

5:74074601-74074616

Conserved species:

panTro2,rheMac2,oryCun2,dasNov2

Binding area:

(Transcript)	5'	UGAACUUAUUUGU________UU______	3'
		_____________GAAGGGAG__CACUUU
		_____________.\|\|\|\|\|\|.__\|\|\|\|\|\|
		_____________UUUCCCUU__GUGAAA
(miRNA)	3'	____________G________C_______	5'

ENSG00000105855 (ITGB8)

hsa-miR-520a-3p

0.99100957775203

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

217-236

0.0553617857366877

Position on chromosome:

7:20449838-20449857

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	GUUUGAGAC____G___UU_U__________	3'
		_________UAGU_UCG__G___AGCACUUU
		_________.\|\|\|_.\|.__\|___\|\|\|\|\|\|\|\|
		_________GUCA_GGU__C___UCGUGAAA
(miRNA)	3'	________U________UU_CCU________	5'

UTR3

6mer

278-304

0.00906438122541722

Position on chromosome:

7:20449899-20449925

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GA___UCU______AGCACUGAUUA______	3'
		__UCC_____GAAG___________CACUUU
		__\|\|\|_____\|\|\|\|___________\|\|\|\|\|\|
		__AGG_____CUUC___________GUGAAA
(miRNA)	3'	_C___UUUCC_____________________	5'

UTR3

6mer

760-765

0.00630764964433831

Position on chromosome:

7:20450381-20450386

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AUAAAAAACUAAUAAUACAAUGU______	3'
		_______________________CACUUU
		_______________________\|\|\|\|\|\|
		_______________________GUGAAA
(miRNA)	3'	______________________C______	5'

UTR3

7mer

2052-2068

0.00450575104529997

Position on chromosome:

7:20451673-20451689

Conserved species:

rheMac2,bosTau4,canFam2,echTel1

Binding area:

(Transcript)	5'	UUCCAAGAUUU__U____UCC___________G	3'
		___________GC_GUCU_______AGCACUU_
		___________.\|_\|\|\|._______\|\|\|\|\|\|\|_
		___________UG_CAGG_______UCGUGAA_
(miRNA)	3'	_____________U____UUUCCCU_______A	5'

UTR3

9mer

2194-2215

0.00257528369011025

Position on chromosome:

7:20451815-20451836

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	GUUAGAU____UCUAC__CC_________	3'
		_______GUCC_____AG__AAGCACUUU
		_______\|\|\|\|_____\|\|__\|\|\|\|\|\|\|\|\|
		_______CAGG_____UC__UUCGUGAAA
(miRNA)	3'	______U____UU_____CC_________	5'

UTR3

6mer

4040-4055

0.00192737295801446

Position on chromosome:

7:20453661-20453676

Conserved species:

panTro2,rheMac2,loxAfr3

Binding area:

(Transcript)	5'	AUAUUUCAUUGAU______ACAU________	3'
		_____________UCCAAG______CACUUU
		_____________\|\|\|\|\|.______\|\|\|\|\|\|
		_____________AGGUUU______GUGAAA
(miRNA)	3'	____________C______CCCUUC______	5'

UTR3

6mer

4082-4106

0.000861937160570828

Position on chromosome:

7:20453703-20453727

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GUG___U___UUGCAACUGUU_______C	3'
		___ACA_UUC___________GGCACUU_
		___\|\|\|_\|.\|___________.\|\|\|\|\|\|_
		___UGU_AGG___________UCGUGAA_
(miRNA)	3'	______C___UUUCCCU___________A	5'

UTR3

6mer

4482-4487

0.00401377056319379

Position on chromosome:

7:20454103-20454108

Conserved species:

panTro2,rheMac2,mm9,oryCun2,canFam2,echTel1

Binding area:

(Transcript)	5'	GAGAUCCUUUUAUAUUAUCAUCU______	3'
		_______________________CACUUU
		_______________________\|\|\|\|\|\|
		_______________________GUGAAA
(miRNA)	3'	______________________C______	5'

UTR3

6mer

4666-4688

0.00294632230340986

Position on chromosome:

7:20454287-20454309

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GGUUUU___CCCUU__CUCUGAU______	3'
		______UCC_____GG_______CACUUU
		______\|\|\|_____\|\|_______\|\|\|\|\|\|
		______AGG_____CC_______GUGAAA
(miRNA)	3'	_____C___UUU____CUUC_________	5'

ENSG00000119048 (UBE2B)

hsa-miR-520a-3p

0.990828325356396

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

350-365

0.0644829102243387

Position on chromosome:

5:133726395-133726410

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	UAGAUUUUUAAA__GG__AA________A	3'
		____________UU__AG__AAGCACUU_
		____________..__\|\|__\|\|\|\|\|\|\|\|_
		____________GG__UC__UUCGUGAA_
(miRNA)	3'	___________A__UU__CC________A	5'

UTR3

6mer

728-740

0.00274897142383266

Position on chromosome:

5:133726773-133726785

Conserved species:

panTro2

Binding area:

(Transcript)	5'	ACCUUUUGCGAUUUC_____________________C	3'
		_______________ACAGUU________GGCACUU_
		_______________\|\|\|\|\|.________.\|\|\|\|\|\|_
		_______________UGUCAG________UCGUGAA_
(miRNA)	3'	_____________________GUUUCCCU_______A	5'

UTR3

8mer

766-792

0.0118321757478606

Position on chromosome:

5:133726811-133726837

Conserved species:

panTro2,rheMac2,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	CG__UU____UGCUGCUU__U________	3'
		__AC__GUUU________GG_AGCACUUU
		__\|\|__\|\|..________\|\|_\|\|\|\|\|\|\|\|
		__UG__CAGG________CC_UCGUGAAA
(miRNA)	3'	____U_____UUUC______U________	5'

UTR3

8mer

1352-1366

0.00455353041068178

Position on chromosome:

5:133727397-133727411

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GUGGCUCCCACCUG______C______________	3'
		______________UAGUCC_______AGCACUUU
		______________.\|\|\|\|\|_______\|\|\|\|\|\|\|\|
		______________GUCAGG_______UCGUGAAA
(miRNA)	3'	_____________U______UUUCCCU________	5'

UTR3

6mer

1464-1484

0.00361745051651123

Position on chromosome:

5:133727509-133727529

Conserved species:

panTro2

Binding area:

(Transcript)	5'	AAAAAAU____________CAUAGU_______G	3'
		_______UAGUU____GGG______GGCACUU_
		_______.\|\|\|.____\|\|\|______.\|\|\|\|\|\|_
		_______GUCAG____CCC______UCGUGAA_
(miRNA)	3'	______U_____GUUU___U____________A	5'

ENSG00000090905 (TNRC6A)

hsa-miR-520a-3p

0.990710210371224

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

9mer

583-606

0.0340426035080276

Position on chromosome:

16:24801022-24801045

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,danRer6

Binding area:

(Transcript)	5'	UCAAA_GG____UUAAAUCC_________	3'
		_____U__AGGG________AAGCACUUU
		_____.__\|\|\|\|________\|\|\|\|\|\|\|\|\|
		_____G__UCCC________UUCGUGAAA
(miRNA)	3'	____G_UU_____________________	5'

UTR3

6mer

1004-1031

0.00647661089544809

Position on chromosome:

16:24801443-24801470

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,danRer6

Binding area:

(Transcript)	5'	____GC____UC___UAUGAAU_______C	3'
		_CAG__UCCA__AGG_______GGCACUU_
		_\|\|\|__\|\|\|\|__\|\|\|_______.\|\|\|\|\|\|_
		_GUC__AGGU__UCC_______UCGUGAA_
(miRNA)	3'	U_________U____CU____________A	5'

UTR3

8mer

4581-4601

0.0281130603145107

Position on chromosome:

16:24829998-24830018

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,canFam2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CCCCUCA_____A___CACA________C	3'
		_______GCAGU_CAG____AAGCACUU_
		_______.\|\|\|\|_\|\|.____\|\|\|\|\|\|\|\|_
		_______UGUCA_GUU____UUCGUGAA_
(miRNA)	3'	____________G___UCCC________A	5'

UTR3

6mer

5247-5273

0.00440612651634601

Position on chromosome:

16:24834962-24834988

Conserved species:

rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	A____CU_U___GACCUUCAC_______C	3'
		_CUAA__G_GGA_________GGCACUU_
		_\|.\|\|__\|_\|\|\|_________.\|\|\|\|\|\|_
		_GGUU__C_CCU_________UCGUGAA_
(miRNA)	3'	A____U______________________A	5'

UTR3

6mer

5510-5538

0.00684839092873547

Position on chromosome:

16:24835225-24835253

Conserved species:

rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	____CUA___UCUGCACAUUUUC______	3'
		ACAG___UUC_____________CACUUU
		\|\|\|\|___\|.\|_____________\|\|\|\|\|\|
		UGUC___AGG_____________GUGAAA
(miRNA)	3'	__________UUUCCCUUC__________	5'

UTR3

7mer

6091-6111

0.00648001750264314

Position on chromosome:

16:24835806-24835826

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,fr2,danRer6

Binding area:

(Transcript)	5'	CCUGCCAC_____AC___CCCU_______	3'
		________CCAGG__GGG____GCACUUU
		________\|\|\|..__\|\|\|____\|\|\|\|\|\|\|
		________GGUUU__CCC____CGUGAAA
(miRNA)	3'	_______A__________UU_________	5'

UTR3

6mer

6122-6149

0.000657142760429278

Position on chromosome:

16:24835837-24835864

Conserved species:

panTro2

Binding area:

(Transcript)	5'	U____UUUUGUUUU_____UUCU______	3'
		_UCCA_________GGAGG____CACUUU
		_\|\|\|\|_________\|\|\|.\|____\|\|\|\|\|\|
		_AGGU_________CCUUC____GUGAAA
(miRNA)	3'	C____UUC_____________________	5'

ENSG00000104343 (UBE2W)

hsa-miR-520a-3p

0.990174517350844

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

7825-7852

0.0763275004284903

Position on chromosome:

8:74706280-74706307

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2

Binding area:

(Transcript)	5'	G_______UACU___AAAAU_________	3'
		_AUAGUCC____GAG_____GAGCACUUU
		_\|.\|\|\|\|\|____.\|\|_____.\|\|\|\|\|\|\|\|
		_UGUCAGG____UUC_____UUCGUGAAA
(miRNA)	3'	________U______CC____________	5'

UTR3

6mer

6062-6081

0.00428076497104707

Position on chromosome:

8:74704517-74704536

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AUAUACUGC____UAA___UUAC_________	3'
		_________UAGU___CAA_______CACUUU
		_________.\|\|\|___\|\|\|_______\|\|\|\|\|\|
		_________GUCA___GUU_______GUGAAA
(miRNA)	3'	________U____G_____UCCCUUC______	5'

UTR3

6mer

5447-5457

0.00253784387442821

Position on chromosome:

8:74703902-74703912

Conserved species:

panTro2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UAGGAAUCAUUGAAAAC___UU____________A	3'
		_________________UCC________GCACUU_
		_________________\|\|\|________\|\|\|\|\|\|_
		_________________AGG________CGUGAA_
(miRNA)	3'	________________C___UUUCCCUU______A	5'

UTR3

6mer

4343-4362

0.00295270635517721

Position on chromosome:

8:74702798-74702817

Conserved species:

panTro2,oryCun2,bosTau4,canFam2,monDom5

Binding area:

(Transcript)	5'	CUGCUGCUU___U___UU_____UCU______	3'
		_________AUA_UUC_____GA___CACUUU
		_________\|.\|_\|.\|_____\|\|___\|\|\|\|\|\|
		_________UGU_AGG_____CU___GUGAAA
(miRNA)	3'	____________C___UUUCC__UC_______	5'

ENSG00000048405 (ZNF800)

hsa-miR-520a-3p

0.989645554272889

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1565-1586

0.027309797655051

Position on chromosome:

7:127011662-127011683

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,echTel1

Binding area:

(Transcript)	5'	UUCUAAG___CUG__UAUUCC_________	3'
		_______GCA___CC_______AGCACUUU
		_______.\|\|___\|\|_______\|\|\|\|\|\|\|\|
		_______UGU___GG_______UCGUGAAA
(miRNA)	3'	__________CA___UUUCCCU________	5'

UTR3

7mer

1193-1210

0.0204813684364179

Position on chromosome:

7:127011290-127011307

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UUUAUUUCUA__UU____UCC___________C	3'
		__________GC__GUUC_______AGCACUU_
		__________.\|__\|\|.\|_______\|\|\|\|\|\|\|_
		__________UG__CAGG_______UCGUGAA_
(miRNA)	3'	____________U_____UUUCCCU_______A	5'

UTR3

9mer

1040-1048

0.0324913511855046

Position on chromosome:

7:127011137-127011145

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	UUUUCUUUAAAUUUUAUACA_________	3'
		____________________AAGCACUUU
		____________________\|\|\|\|\|\|\|\|\|
		____________________UUCGUGAAA
(miRNA)	3'	___________________C_________	5'

UTR3

6mer

808-822

0.00495054232839515

Position on chromosome:

7:127010905-127010919

Conserved species:

panTro2,rheMac2,rn4,oryCun2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UCCCAAGAAAAAUC_______AC________	3'
		______________UUAAAGG____CACUUU
		______________..\|\|\|\|\|____\|\|\|\|\|\|
		______________GGUUUCC____GUGAAA
(miRNA)	3'	_____________A_______CUUC______	5'

ENSG00000163659 (TIPARP)

hsa-miR-520a-3p

0.989460294609827

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

84-111

0.0133397790810735

Position on chromosome:

3:156423005-156423032

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	A________UU____CAUUAAUAG________	3'
		_ACAG__CA___GGA_________GGCACUUU
		_\|\|\|\|__\|\|___\|\|\|_________.\|\|\|\|\|\|\|
		_UGUC__GU___CCU_________UCGUGAAA
(miRNA)	3'	_____AG__UUC____________________	5'

UTR3

8mer

1336-1356

0.0725535322514632

Position on chromosome:

3:156424257-156424277

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AGUGAAU______GUUUAUU________A	3'
		_______CAGUCU_______AAGCACUU_
		_______\|\|\|\|\|._______\|\|\|\|\|\|\|\|_
		_______GUCAGG_______UUCGUGAA_
(miRNA)	3'	______U______UUUCCC_________A	5'

UTR3

7mer

851-865

0.00810504977292066

Position on chromosome:

3:156396338-156396352

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	GUGUAUUCAAUGA___UC____________G	3'
		_____________UUC__AGG__AGCACUU_
		_____________\|.\|__\|\|\|__\|\|\|\|\|\|\|_
		_____________AGG__UCC__UCGUGAA_
(miRNA)	3'	____________C___UU___CU_______A	5'