mirExTra 2.0 Data Sources Section
Welcome to the DIANA-mirExtra 2.0 Data Sources Section!
miRNA:mRNA Interactions
All miRNA:mRNA interactions utilized in DIANA-mirExTra v2.0 are derived from two sources:DIANA-microT-CDS: the 5th version of the DIANA-microT miRNA target prediction algorithm. It is a state-of-the-art in silico prediction method to identify miRNA targets on 3’UTR and CDS mRNA regions. All available interactions can be browsed at the microT-CDS web page: http://www.microrna.gr/microT-CDS/. Download: Following any type of query (one or more miRNAs AND/OR one or more mRNAs) users can download all interactions locally in the form of a text file by selecting the download button. Please find extensive further information in the relevant publication:
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Vlachos IS, Vergoulis T, Reczko M, Filippidis C, Dalamagas T, Hatzigeorgiou AG (2013) DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic acids research 41: W169-173. Hyperlink to the Publication
DIANA-TarBase v7.0: all experimentally supported miRNA:mRNA interactions are derived from the 7th version of DIANA-TarBase database. It is a reference database for experimentally supported miRNA targets on mRNAs. It currently comprises more than 500,000 miRNA interactions. The dataset can be examined in depth using the online database interface: http://www.microrna.gr/tarbase/. Download: Interested scholars can download the dataset for local use directly from their DIANA account. TarBase v7.0 download is free for academic, research and non-profit institutions.
Please find extensive further information in the relevant publication:
Vlachos IS, Paraskevopoulou MD, Karagkouni D, Georgakilas G, Vergoulis T, Kanellos I, Anastasopoulos IL, Maniou S, Karathanou K, Kalfakakou D, Fevgas A, Dalamagas T, Hatzigeorgiou AG (2015) DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. Nucleic Acids Res 43: D153-159. Hyperlink to the Publication.
TF:miRNA Interactions
All TF:miRNA interactions utilized in DIANA-mirExTra v2.0 have been derived from DIANA-miRGen v3.0. DIANA-miRGen v3.0 is a database indexing miRNA transcription start sites (TSSs) and hundreds of thousands of transcription factor binding sites (TFBSs) for human and mouse. The database can be examined in depth using the miRGen v3.0 interface: http://www.microrna.gr/mirgen/. Download: DIANA-miRGen v3.0 is free for download to all Academic/Research/non-profit Institutions. The download module is accessible directly from miRGen v3.0 interface by pressing the “Download” button.Please find further information in the relevant publication:
Georgakilas G, Vlachos IS, Zagganas K, Vergoulis T, Paraskevopoulou MD, Kanellos I, Tsanakas P, Dellis D, Fevgas A, Dalamagas T, Hatizgeorgiou AG (2015), DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators, Nucleic Acids Res (44, D190-195).
TF:mRNA Interactions
All TF:mRNA interactions utilized in DIANA-mirExTra v2.0 are derived from ORegAnno Open Regulatory Annotation database v3.0. The database can be accessed and browsed from the relevant website (http://www.oreganno.org). Download: All ORegAnno-indexed interactions are available from the download section of the relevant web page. The download is free to all users. Please find further information in the ORegAnno v3.0 manuscript:
Lesurf R, Cotto KC, Wang G, Griffith M, Kasaian K, Jones SJ, Montgomery SB, Griffith OL, Open Regulatory Annotation Consortium. ORegAnno 3.0: a community-driven resource for curated regulatory annotation. Nucleic Acids Res. 2016 Jan 4;44(D1):D126-32. Hyperlink to the Publication.
RNA-Seq Datasets
The DIANA-mirExTra v2.0 Database comprises numerous RNA-Seq datasets from 4 species. Currently, the following datasets have been incorporated:
Accession | Repository | Cell_type/Tissue | Species | Condition | Description |
ENCFF000EZR|ENCFF000EZH | encodeproject.org | GM12878 | Homo sapiens | cytosol | B-lymphocyte |
ENCFF001REJ|ENCFF001REK | encodeproject.org | GM12878 | Homo sapiens | NA | B-lymphocyte |
ENCFF000FOV|ENCFF000FOM | encodeproject.org | HeLaS3 | Homo sapiens | NA | Cervical Carcinoma |
ENCFF000GEQ|ENCFF000GET | encodeproject.org | HMEpC | Homo sapiens | NA | Mammary Epithelial Cells |
ENCFF000GGZ|ENCFF000GHA | encodeproject.org | HMSC-BM | Homo sapiens | NA | Mesenchymal Stem Cells |
ENCFF322VHJ|ENCFF109IUU | encodeproject.org | HREpiC | Homo sapiens | NA | Kidney Epithelial Cells |
ENCFF002DKY|ENCFF002DKX | encodeproject.org | MCF7 | Homo sapiens | NA | Adenocarcinoma |
SRR837795 | ncbi.nlm.nih.gov/sra | LCLBACD1 | Homo sapiens | miR-BHRF1-1 mutant virus | LCL infected with an EBV B95-8 BACmid |
SRR837796 | ncbi.nlm.nih.gov/sra | LCLBACD1 | Homo sapiens | miR-BHRF1-1 mutant virus | LCL infected with an EBV B95-8 BACmid |
SRR837797 | ncbi.nlm.nih.gov/sra | LCLBACD2 | Homo sapiens | miR-BHRF1-2 mutant virus | LCL infected with an EBV B95-8 BACmid |
SRR837798 | ncbi.nlm.nih.gov/sra | LCLBACD3 | Homo sapiens | miR-BHRF1-3 mutant virus | LCL infected with an EBV B95-8 BACmid |
SRR837794 | ncbi.nlm.nih.gov/sra | LCLBAC | Homo sapiens | NA | LCL infected with an EBV B95-8 BACmid |
wgEncodeCshlLongRnaSeqH1hescCellPapFastqRep1 | hgdownload.cse.ucsc.edu | H1hESC | Homo sapiens | NA | Embryonic Stem Cells |
wgEncodeCshlLongRnaSeqImr90CellPapFastqRep1 | hgdownload.cse.ucsc.edu | IMR90 | Homo sapiens | NA | Fetal Lung Fibroblasts |
wgEncodeCshlLongRnaSeqA549CellPapFastqRep1 | hgdownload.cse.ucsc.edu | A549 | Homo sapiens | NA | Adenocarcinomic alveolar basal epithelial cells |
wgEncodeCshlLongRnaSeqHepg2CellPapFastqRep1 | hgdownload.cse.ucsc.edu | HepG2 | Homo sapiens | NA | Hepatocellular Carcinoma |
wgEncodeCshlLongRnaSeqHuvecCellPapFastqRep1 | hgdownload.cse.ucsc.edu | HUVEC | Homo sapiens | NA | Umbilical Vein |
wgEncodeCshlLongRnaSeqK562CellPapFastqRep1 | hgdownload.cse.ucsc.edu | K562 | Homo sapiens | NA | Chronic Myelogenous Leukemia (CML) |
ENCFF001IUD|ENCFF001IUF | encodeproject.org | Brain | Mus musculus | NA | Frontal Cortex |
ENCFF001NEG|ENCFF001NEC | encodeproject.org | MEL | Mus musculus | NA | Leukemia (K562 analog) |
ENCFF001IDD|ENCFF001ICW | encodeproject.org | C2C12 | Mus musculus | NA | Myoblast |
SRR530640_Rep2 | ncbi.nlm.nih.gov/sra | mESC | Mus musculus | NA | Embryonic Stem Cells |
wgEncodeCshlLongRnaSeqThymusAdult8wks - Rep1 | hgdownload.cse.ucsc.edu | Thymus | Mus musculus | NA | Thymus |
wgEncodeCshlLongRnaSeqLungAdult8wksFastq - Rep1 | hgdownload.cse.ucsc.edu | Lung | Mus musculus | NA | Lung |
wgEncodeCshlLongRnaSeqWbrainE14halfFastqRep1 | hgdownload.cse.ucsc.edu | E14-Brain | Mus musculus | NA | E14.5 brain |
wgEncodeCshlLongRnaSeqHeartAdult8wksFastq - Rep1 | hgdownload.cse.ucsc.edu | Heart | Mus musculus | NA | Heart |
wgEncodeCshlLongRnaSeqKidneyAdult8wksFastq - Rep1 | hgdownload.cse.ucsc.edu | Kidney | Mus musculus | NA | Kidney |
wgEncodeCshlLongRnaSeqLiverAdult8wksFastq - Rep1 | hgdownload.cse.ucsc.edu | Liver | Mus musculus | NA | Liver |
modENCODE_3981 | modencode.org | Embryo | C. elegans | NA | Early-Embryos-50-0-N2 |
modENCODE_3873 | modencode.org | Embryo | C. elegans | NA | Early-Embryos-50-0-N2 |
modENCODE_3974 | modencode.org | Embryo | C. elegans | NA | Early-Embryos-N2 |
modENCODE_3975 | modencode.org | Embryo | C. elegans | NA | Early-Embryos-N2 |
modENCODE_4153 | modencode.org | Embryo | C. elegans | NA | Embryos-dpy28(y1)-him-8(e1489) |
modENCODE_4520 | modencode.org | Embryo | C. elegans | NA | Embryos-dpy28(y1)-him-8(e1489) |
modENCODE_4527 | modencode.org | Whole-organism | C. elegans | NA | L1-4-hrs-post-L1-stage-larvae-N2 |
modENCODE_4007 | modencode.org | Whole-organism | C. elegans | NA | L1-4-hrs-post-L1-stage-larvae-N2 |
modENCODE_3882_Rep1 | modencode.org | Whole-organism | C. elegans | NA | L1-4-hrs-post-L1-stage-larvae-N2 |
modENCODE_4531 | modencode.org | Whole-organism | C. elegans | NA | L2-4-stage-larvae-N2 |
modENCODE_3881_Rep1 | modencode.org | Whole-organism | C. elegans | NA | L2-4-stage-larvae-N2 |
modENCODE_4041 | modencode.org | Whole-organism | C. elegans | NA | L3-26.75-hrs-post-L1-stage-larvae-N2 |
modENCODE_4534 | modencode.org | Whole-organism | C. elegans | NA | L4-34.25-hrs-post-L1-stage-larvae-N2 |
modENCODE_4535 | modencode.org | Whole-organism | C. elegans | NA | L4-34.25-hrs-post-L1-stage-larvae-N2 |
modENCODE_4577 | modencode.org | Whole-organism | C. elegans | NA | L4-34.25-hrs-post-L1-stage-larvae-N2 |
modENCODE_4173 | modencode.org | Whole-organism | C. elegans | NA | L4-34.25-hrs-post-L1-stage-larvae-N2 |
modENCODE_3977 | modencode.org | Embryo | C. elegans | NA | Late-Embryonic-stage-4.5-hrs-post-early-Embryos-N2 |
modENCODE_3978 | modencode.org | Embryo | C. elegans | NA | Late-Embryonic-stage-4.5-hrs-post-early-Embryos-N2 |
modENCODE_4544 | modencode.org | Embryo | C. elegans | NA | Late-Embryonic-stage-4.5-hrs-post-early-Embryos-N2 |
modENCODE_4541 | modencode.org | Whole-organism | C. elegans | NA | Male-L4-30-hrs-post-L1-stage-larvae-dpy28(y1)-him-8(e1489) |
modENCODE_4540 | modencode.org | Whole-organism | C. elegans | NA | Male-L4-30-hrs-post-L1-stage-larvae-dpy28(y1)-him-8(e1489) |
modENCODE_4163 | modencode.org | Whole-organism | C. elegans | NA | Male-L4-30-hrs-post-L1-stage-larvae-dpy28(y1)-him-8(e1489) |
modENCODE_4582 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-(pre-gravid)-46-hrs-post-L1-stage-larvae-N2 |
modENCODE_4129 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-(pre-gravid)-46-hrs-post-L1-stage-larvae-N2 |
modENCODE_4581 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-(pre-gravid)-46-hrs-post-L1-stage-larvae-N2 |
modENCODE_4133 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-(pre-gravid)-46-hrs-post-L1-stage-larvae-N2 |
modENCODE_4169 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-N2 |
modENCODE_4519 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-N2 |
modENCODE_4592 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-N2 |
modENCODE_4591 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-N2 |
modENCODE_2026 | modencode.org | Whole-organism | Drosophila melanogaster | NA | Adult-Female, yellow cinnabar brown speck |
modENCODE_2027 | modencode.org | Whole-organism | Drosophila melanogaster | NA | Adult-Male, yellow cinnabar brown speck |
modENCODE_2010 | modencode.org | Embryo | Drosophila melanogaster | NA | Embryos-0-4-hr, yellow cinnabar brown speck |
modENCODE_2021 | modencode.org | Embryo | Drosophila melanogaster | NA | Embryos-12-16-hr, yellow cinnabar brown speck |
modENCODE_2023 | modencode.org | Embryo | Drosophila melanogaster | NA | Embryos-20-24-hr, yellow cinnabar brown speck |
modENCODE_2022 | modencode.org | Embryo | Drosophila melanogaster | NA | Embryos-16-20-hr, yellow cinnabar brown speck |
modENCODE_2024 | modencode.org | Larvae | Drosophila melanogaster | NA | Larvae-L1-stage, yellow cinnabar brown speck |
modENCODE_2025 | modencode.org | Larvae | Drosophila melanogaster | NA | Larvae-L2-stage, yellow cinnabar brown speck |
modENCODE_2029 | modencode.org | Larvae | Drosophila melanogaster | NA | Larvae-L3-stage, yellow cinnabar brown speck |
modENCODE_2030 | modencode.org | Whole-organism | Drosophila melanogaster | NA | Pupae, yellow cinnabar brown speck |
Small-RNA-Seq Datasets
The DIANA-mirExTra v2.0 Database comprises numerous small-RNA-Seq datasets from 4 species. Currently, the following datasets have been incorporated:
Accession | Repository | Cell_type/Tissue | Species | Condition | Description |
SRR029126 | ncbi.nlm.nih.gov/sra | 143B | Homo sapiens | NA | Osteocarcoma |
SRR1810082 | ncbi.nlm.nih.gov/sra | BicR | Homo sapiens | NA | Prostate Cancer Cells |
SRR1810083 | ncbi.nlm.nih.gov/sra | BicR | Homo sapiens | NA | Prostate Cancer Cells |
SRR1810084 | ncbi.nlm.nih.gov/sra | BicR | Homo sapiens | NA | Prostate Cancer Cells |
SRR1636960 | ncbi.nlm.nih.gov/sra | H7 | Homo sapiens | time: 1y | hESC-derived cardiomyocytes |
SRR1636962 | ncbi.nlm.nih.gov/sra | H7 | Homo sapiens | time: 15d | hESC-derived cardiomyocytes |
SRR1636963 | ncbi.nlm.nih.gov/sra | H7 | Homo sapiens | time: 15d | hESC-derived cardiomyocytes |
SRR1636969 | ncbi.nlm.nih.gov/sra | H7 | Homo sapiens | time: 21d | hESC-derived cardiomyocytes |
SRR1988287 | ncbi.nlm.nih.gov/sra | H9 | Homo sapiens | NA | Embryonic Stem Cells |
SRR1988288 | ncbi.nlm.nih.gov/sra | H9 | Homo sapiens | NA | Embryonic Stem Cells |
SRR1988291 | ncbi.nlm.nih.gov/sra | H9 | Homo sapiens | time: 14d | Differentiated forebrain cells from ESCs |
SRR1988292 | ncbi.nlm.nih.gov/sra | H9 | Homo sapiens | time: 14d | Differentiated forebrain cells from ESCs |
SRR1988295 | ncbi.nlm.nih.gov/sra | H9 | Homo sapiens | time: 14d | Differentiated mesenchymal cells from ESCs |
SRR1988296 | ncbi.nlm.nih.gov/sra | H9 | Homo sapiens | time: 14d | Differentiated mesenchymal cells from ESCs |
SRR1793807 | ncbi.nlm.nih.gov/sra | Kem | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR1793808 | ncbi.nlm.nih.gov/sra | Kem | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR1793809 | ncbi.nlm.nih.gov/sra | Kem | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR1810079 | ncbi.nlm.nih.gov/sra | LNCaP | Homo sapiens | NA | Prostate Cancer Cells |
SRR1810080 | ncbi.nlm.nih.gov/sra | LNCaP | Homo sapiens | NA | Prostate Cancer Cells |
SRR1810081 | ncbi.nlm.nih.gov/sra | LNCaP | Homo sapiens | NA | Prostate Cancer Cells |
SRR2084358 | ncbi.nlm.nih.gov/sra | MCF7 | Homo sapiens | NA | Adenocarcinoma |
SRR2084359 | ncbi.nlm.nih.gov/sra | MCF7 | Homo sapiens | DHA-treated MCF7 cells | Adenocarcinoma |
SRR1793804 | ncbi.nlm.nih.gov/sra | Mutu | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR1793805 | ncbi.nlm.nih.gov/sra | Mutu | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR1793806 | ncbi.nlm.nih.gov/sra | Mutu | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR2038053 | ncbi.nlm.nih.gov/sra | Lung | Homo sapiens | NA | Lung |
SRR2038054 | ncbi.nlm.nih.gov/sra | Lung | Homo sapiens | NA | Lung |
SRR2038055 | ncbi.nlm.nih.gov/sra | Lung | Homo sapiens | NA | Lung |
SRR070231 | ncbi.nlm.nih.gov/sra | Kidney | Homo sapiens | NA | Kidney Cancer |
SRR070233 | ncbi.nlm.nih.gov/sra | Kidney | Homo sapiens | NA | Kidney Cancer |
SRR070230 | ncbi.nlm.nih.gov/sra | Kidney | Homo sapiens | NA | Kidney |
SRR070232 | ncbi.nlm.nih.gov/sra | Kidney | Homo sapiens | NA | Kidney |
SRR2038041 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Brain Cortex |
SRR2038042 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Brain Cortex |
SRR2038043 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Brain Cortex |
SRR2061804 | ncbi.nlm.nih.gov/sra | Heart | Homo sapiens | NA | Heart |
SRR2061803 | ncbi.nlm.nih.gov/sra | Heart | Homo sapiens | NA | Heart |
SRR1813908 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Colon |
SRR1813909 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Colon |
SRR1646444 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Primary colon adenocarcinoma |
SRR1646445 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Primary colon adenocarcinoma |
SRR1646446 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Primary colon adenocarcinoma |
SRR1646447 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Primary colon adenocarcinoma |
SRR531692 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Glioma |
SRR531694 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Glioma |
SRR1759212 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Prefrontal Cortex (Brodmann Area 9) |
SRR1759213 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Prefrontal Cortex (Brodmann Area 9) |
SRR191548 | ncbi.nlm.nih.gov/sra | Breast | Homo sapiens | NA | Breast |
SRR191578 | ncbi.nlm.nih.gov/sra | Breast | Homo sapiens | NA | Breast |
SRR1525340 | ncbi.nlm.nih.gov/sra | Spinal Cord | Homo sapiens | NA | Ventral horns from lumbar spinal cord |
SRR1525341 | ncbi.nlm.nih.gov/sra | Spinal Cord | Homo sapiens | NA | Ventral horns from lumbar spinal cord |
SRR1525360 | ncbi.nlm.nih.gov/sra | Spinal Cord | Homo sapiens | NA | Ventral horns from lumbar spinal cord |
SRR1525378 | ncbi.nlm.nih.gov/sra | Spinal Cord | Homo sapiens | NA | Ventral horns from lumbar spinal cord |
SRR1525379 | ncbi.nlm.nih.gov/sra | Spinal Cord | Homo sapiens | NA | Ventral horns from lumbar spinal cord |
SRR1820679 | ncbi.nlm.nih.gov/sra | Muscle | Homo sapiens | NA | Muscle |
SRR1820680 | ncbi.nlm.nih.gov/sra | Muscle | Homo sapiens | NA | Muscle |
SRR1211224 | ncbi.nlm.nih.gov/sra | Uterus | Homo sapiens | NA | Endometriosis, eutopic endometrium of endometriosis patient |
SRR1211225 | ncbi.nlm.nih.gov/sra | Uterus | Homo sapiens | NA | Endometriosis, peritoneal endometriotic lesion |
SRR1211226 | ncbi.nlm.nih.gov/sra | Uterus | Homo sapiens | NA | Healthy peritoneal adjacent to endometriosis |
SRR1211227 | ncbi.nlm.nih.gov/sra | Uterus | Homo sapiens | NA | Endometriosis, peritoneal endometriotic lesion |
SRR1211230 | ncbi.nlm.nih.gov/sra | Uterus | Homo sapiens | NA | Healthy peritoneal adjacent to endometriosis |
SRR1759248 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Huntington's Disease |
SRR1759249 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Huntington's Disease |
SRR871609 | ncbi.nlm.nih.gov/sra | Pancreas | Homo sapiens | NA | Pancreatic islet |
SRR871671 | ncbi.nlm.nih.gov/sra | Pancreas | Homo sapiens | FACS-enriched pancreatic beta-cells | Pancreatic beta-cell |
SRR873381 | ncbi.nlm.nih.gov/sra | Pancreas | Homo sapiens | NA | Pancreatic islet |
SRR873410 | ncbi.nlm.nih.gov/sra | Pancreas | Homo sapiens | FACS-enriched pancreatic beta-cells | Pancreatic beta-cell |
SRR873401 | ncbi.nlm.nih.gov/sra | Pancreas | Homo sapiens | FACS-enriched pancreatic beta-cells | Pancreatic beta-cell |
SRR1813910 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Diverticulitis |
SRR1813911 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Diverticulitis |
SRR1813926 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Crohn's Disease |
SRR1813924 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Crohn's Disease |
SRR1813922 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Crohn's Disease |
SRR1813925 | ncbi.nlm.nih.gov/sra | Colon | Homo sapiens | NA | Crohn's Disease |
SRR1103943 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Alzheimer's Disease |
SRR1103944 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Alzheimer's Disease |
SRR1103945 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Alzheimer's Disease |
SRR1103946 | ncbi.nlm.nih.gov/sra | Brain | Homo sapiens | NA | Alzheimer's Disease |
SRR1658394 | ncbi.nlm.nih.gov/sra | Thyroid | Homo sapiens | NA | Papillary Thyroid Carcinoma |
SRR1658395 | ncbi.nlm.nih.gov/sra | Thyroid | Homo sapiens | NA | Papillary Thyroid Carcinoma |
SRR1658402 | ncbi.nlm.nih.gov/sra | Thyroid | Homo sapiens | NA | Thyroid |
SRR1658403 | ncbi.nlm.nih.gov/sra | Thyroid | Homo sapiens | NA | Thyroid |
SRR1777154 | ncbi.nlm.nih.gov/sra | Neurons | Homo sapiens | NA | Schizophrenia-Neurons derived from iPSCs |
SRR1777155 | ncbi.nlm.nih.gov/sra | Neurons | Homo sapiens | NA | Schizophrenia-Neurons derived from iPSCs |
SRR1777161 | ncbi.nlm.nih.gov/sra | Neurons | Homo sapiens | NA | Neurons derived from iPSCs |
SRR1777162 | ncbi.nlm.nih.gov/sra | Neurons | Homo sapiens | NA | Neurons derived from iPSCs |
SRR965804 | ncbi.nlm.nih.gov/sra | Thyroid | Homo sapiens | NA | Follicular Thyroid Carcinoma |
SRR965806 | ncbi.nlm.nih.gov/sra | Thyroid | Homo sapiens | NA | Follicular Thyroid Carcinoma |
SRR1813304 | ncbi.nlm.nih.gov/sra | Primary CLL MNCs | Homo sapiens | NA | Leukemia |
SRR1813326 | ncbi.nlm.nih.gov/sra | Primary CLL MNCs | Homo sapiens | NA | Leukemia |
SRR1813303 | ncbi.nlm.nih.gov/sra | Primary CLL MNCs | Homo sapiens | NA | Leukemia |
SRR1793810 | ncbi.nlm.nih.gov/sra | Sav | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR1793811 | ncbi.nlm.nih.gov/sra | Sav | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR1793812 | ncbi.nlm.nih.gov/sra | Sav | Homo sapiens | NA | EBV-positive Burkitt's lymphoma cell line |
SRR029125 | ncbi.nlm.nih.gov/sra | U2OS | Homo sapiens | NA | Osteocarcoma |
GSM973668_Rep1 | ncbi.nlm.nih.gov/geo | A549 | Homo sapiens | NA | Adenocarcinomic alveolar basal epithelial cells |
GSM973668_Rep2 | ncbi.nlm.nih.gov/geo | A549 | Homo sapiens | NA | Adenocarcinomic alveolar basal epithelial cells |
GSM973668_Rep3 | ncbi.nlm.nih.gov/geo | A549 | Homo sapiens | NA | Adenocarcinomic alveolar basal epithelial cells |
GSM973668_Rep4 | ncbi.nlm.nih.gov/geo | A549 | Homo sapiens | NA | Adenocarcinomic alveolar basal epithelial cells |
GSM897074_Rep1 | ncbi.nlm.nih.gov/geo | Ag04450 | Homo sapiens | NA | Fetal Lung Fibroblasts |
GSM897074_Rep2 | ncbi.nlm.nih.gov/geo | Ag04450 | Homo sapiens | NA | Fetal Lung Fibroblasts |
GSM897077_Rep1 | ncbi.nlm.nih.gov/geo | BJ | Homo sapiens | NA | Skin Fibroblasts |
GSM897077_Rep2 | ncbi.nlm.nih.gov/geo | BJ | Homo sapiens | NA | Skin Fibroblasts |
GSM977043_Rep1 | ncbi.nlm.nih.gov/geo | CD20+ | Homo sapiens | NA | B Cells |
GSM977043_Rep3 | ncbi.nlm.nih.gov/geo | CD20+ | Homo sapiens | NA | B Cells |
GSM973662_Rep1 | ncbi.nlm.nih.gov/geo | CD34+_Mobilized | Homo sapiens | NA | Hematopoietic Progenitor Cells - mobilized |
GSM605625_Rep1 | ncbi.nlm.nih.gov/geo | GM12878 | Homo sapiens | NA | B-lymphocyte |
GSM605625_Rep2 | ncbi.nlm.nih.gov/geo | GM12878 | Homo sapiens | NA | B-lymphocyte |
GSM897073_Rep1 | ncbi.nlm.nih.gov/geo | H1hESC | Homo sapiens | NA | Embryonic Stem Cells |
GSM897073_Rep2 | ncbi.nlm.nih.gov/geo | H1hESC | Homo sapiens | NA | Embryonic Stem Cells |
GSM977031_Rep1 | ncbi.nlm.nih.gov/geo | H1neurons | Homo sapiens | NA | Neurons derived from H1 ESCs |
GSM977031_Rep2 | ncbi.nlm.nih.gov/geo | H1neurons | Homo sapiens | NA | Neurons derived from H1 ESCs |
GSM977035_Rep1 | ncbi.nlm.nih.gov/geo | HAoAF | Homo sapiens | NA | Aortic Adventitial Fibroblasts |
GSM977035_Rep2 | ncbi.nlm.nih.gov/geo | HAoAF | Homo sapiens | NA | Aortic Adventitial Fibroblasts |
GSM977040_Rep1 | ncbi.nlm.nih.gov/geo | HAoEC | Homo sapiens | NA | Aortic Endothelial |
GSM977040_Rep2 | ncbi.nlm.nih.gov/geo | HAoEC | Homo sapiens | NA | Aortic Endothelial |
GSM977037_Rep1 | ncbi.nlm.nih.gov/geo | HCH | Homo sapiens | NA | Undifferentiated Chondrocytes |
GSM977037_Rep2 | ncbi.nlm.nih.gov/geo | HCH | Homo sapiens | NA | Undifferentiated Chondrocytes |
GSM897079_Rep1 | ncbi.nlm.nih.gov/geo | HeLaS3 | Homo sapiens | NA | Cervical Carcinoma |
GSM897079_Rep2 | ncbi.nlm.nih.gov/geo | HeLaS3 | Homo sapiens | NA | Cervical Carcinoma |
GSM897084_Rep1 | ncbi.nlm.nih.gov/geo | HepG2 | Homo sapiens | NA | Hepatocellular Carcinoma |
GSM897084_Rep2 | ncbi.nlm.nih.gov/geo | HepG2 | Homo sapiens | NA | Hepatocellular Carcinoma |
GSM977038_Rep1 | ncbi.nlm.nih.gov/geo | HFDPC | Homo sapiens | NA | Follicle Dermal Papilla Cells |
GSM977038_Rep2 | ncbi.nlm.nih.gov/geo | HFDPC | Homo sapiens | NA | Follicle Dermal Papilla Cells |
GSM977050 | ncbi.nlm.nih.gov/geo | HMEpC | Homo sapiens | NA | Mammary Epithelial Cells |
GSM977041_Rep1 | ncbi.nlm.nih.gov/geo | HMSC-AT | Homo sapiens | NA | Mesenchymal Stem Cells |
GSM977041_Rep2 | ncbi.nlm.nih.gov/geo | HMSC-AT | Homo sapiens | NA | Mesenchymal Stem Cells |
GSM977028_Rep1 | ncbi.nlm.nih.gov/geo | HMSC-BM | Homo sapiens | NA | Mesenchymal Stem Cells |
GSM977028_Rep2 | ncbi.nlm.nih.gov/geo | HMSC-BM | Homo sapiens | NA | Mesenchymal Stem Cells |
GSM977048_Rep1 | ncbi.nlm.nih.gov/geo | HMSC-UC | Homo sapiens | NA | Mesenchymal Stem Cells |
GSM977048_Rep2 | ncbi.nlm.nih.gov/geo | HMSC-UC | Homo sapiens | NA | Mesenchymal Stem Cells |
GSM977036_Rep1 | ncbi.nlm.nih.gov/geo | HOB | Homo sapiens | NA | Osteoblasts |
GSM977036_Rep2 | ncbi.nlm.nih.gov/geo | HOB | Homo sapiens | NA | Osteoblasts |
GSM977049_Rep1 | ncbi.nlm.nih.gov/geo | HPC-PL | Homo sapiens | NA | Undifferentiated Pericytes |
GSM977049_Rep2 | ncbi.nlm.nih.gov/geo | HPC-PL | Homo sapiens | NA | Undifferentiated Pericytes |
GSM977052_Rep2 | ncbi.nlm.nih.gov/geo | HPIEpC | Homo sapiens | NA | Placental Epithelial Cells amniotic membrane |
GSM977051_Rep1 | ncbi.nlm.nih.gov/geo | HSaVEC | Homo sapiens | NA | Saphenous Vein Endothelial Cells |
GSM977051_Rep2 | ncbi.nlm.nih.gov/geo | HSaVEC | Homo sapiens | NA | Saphenous Vein Endothelial Cells |
GSM977033_Rep1 | ncbi.nlm.nih.gov/geo | HVMF | Homo sapiens | NA | Villous Mesenchymal Fibroblast Cells |
GSM977033_Rep2 | ncbi.nlm.nih.gov/geo | HVMF | Homo sapiens | NA | Villous Mesenchymal Fibroblast Cells |
GSM977046_Rep1 | ncbi.nlm.nih.gov/geo | HWP | Homo sapiens | NA | Undifferentiated White Preadipocytes |
GSM977046_Rep2 | ncbi.nlm.nih.gov/geo | HWP | Homo sapiens | NA | Undifferentiated White Preadipocytes |
GSM973691_Rep1 | ncbi.nlm.nih.gov/geo | IMR90 | Homo sapiens | NA | Fetal Lung Fibroblasts |
GSM973691_Rep2 | ncbi.nlm.nih.gov/geo | IMR90 | Homo sapiens | NA | Fetal Lung Fibroblasts |
GSM605630_Rep1 | ncbi.nlm.nih.gov/geo | K562 | Homo sapiens | NA | Chronic Myelogenous Leukemia (CML) |
GSM605630_Rep2 | ncbi.nlm.nih.gov/geo | K562 | Homo sapiens | NA | Chronic Myelogenous Leukemia (CML) |
GSM897081_Rep2 | ncbi.nlm.nih.gov/geo | MCF7 | Homo sapiens | NA | Adenocarcinoma |
GSM973690_Rep3 | ncbi.nlm.nih.gov/geo | MCF7 | Homo sapiens | NA | Adenocarcinoma |
GSM973690_Rep4 | ncbi.nlm.nih.gov/geo | MCF7 | Homo sapiens | NA | Adenocarcinoma |
GSM897081_Rep1 | ncbi.nlm.nih.gov/geo | MCF7 | Homo sapiens | NA | Adenocarcinoma |
GSM977044_Rep1 | ncbi.nlm.nih.gov/geo | MonocytesCD14+ | Homo sapiens | NA | CD14-positive cells from leukapheresis production |
GSM977044_Rep2 | ncbi.nlm.nih.gov/geo | MonocytesCD14+ | Homo sapiens | NA | CD14-positive cells from leukapheresis production |
GSM605626 | ncbi.nlm.nih.gov/geo | Prostate | Homo sapiens | NA | Prostate |
GSM977034_Rep1 | ncbi.nlm.nih.gov/geo | NHDF | Homo sapiens | NA | Dermal Fibroblasts |
GSM977034_Rep2 | ncbi.nlm.nih.gov/geo | NHDF | Homo sapiens | NA | Dermal Fibroblasts |
GSM897086_Rep1 | ncbi.nlm.nih.gov/geo | NHEK | Homo sapiens | NA | Epidermal Keratinocytes |
GSM897086_Rep2 | ncbi.nlm.nih.gov/geo | NHEK | Homo sapiens | NA | Epidermal Keratinocytes |
GSM977045_Rep2 | ncbi.nlm.nih.gov/geo | NHEM.f_M2 | Homo sapiens | NA | Epidermal Melanocytes Juvenile |
GSM977047_Rep2 | ncbi.nlm.nih.gov/geo | NHEM_M2 | Homo sapiens | NA | Epidermal Melanocytes adult |
GSM977039_Rep1 | ncbi.nlm.nih.gov/geo | SkMC | Homo sapiens | NA | Skeletal Muscle Cells |
GSM977039_Rep2 | ncbi.nlm.nih.gov/geo | SkMC | Homo sapiens | NA | Skeletal Muscle Cells |
GSM973667_Rep3 | ncbi.nlm.nih.gov/geo | SK-N-SH | Homo sapiens | NA | Neuroblastoma |
GSM973675_Rep3 | ncbi.nlm.nih.gov/geo | SK-N-SH | Homo sapiens | NA | Neuroblastoma |
GSM973675_Rep4 | ncbi.nlm.nih.gov/geo | SK-N-SH | Homo sapiens | NA | Neuroblastoma |
GSM973667_Rep4 | ncbi.nlm.nih.gov/geo | SK-N-SH | Homo sapiens | NA | Neuroblastoma |
GSM897070_Rep1 | ncbi.nlm.nih.gov/geo | SK-N-SH_RA | Homo sapiens | Retinoic Acid-treated | Neuroblastoma |
GSM897070_Rep2 | ncbi.nlm.nih.gov/geo | SK-N-SH_RA | Homo sapiens | Retinoic Acid-treated | Neuroblastoma |
ERR852093 | ebi.ac.uk/ena | Pancreas | Homo sapiens | NA | Pancreatic ductal adenocarcinoma |
ERR852095 | ebi.ac.uk/ena | Pancreas | Homo sapiens | NA | Pancreatic ductal adenocarcinoma |
ERR852096 | ebi.ac.uk/ena | Pancreas | Homo sapiens | NA | Pancreatic ductal adenocarcinoma |
ERR852089 | ebi.ac.uk/ena | Pancreas | Homo sapiens | NA | Pancreas |
ERR852097 | ebi.ac.uk/ena | Pancreas | Homo sapiens | NA | Pancreas |
ERR852099 | ebi.ac.uk/ena | Pancreas | Homo sapiens | NA | Pancreas |
ERR184062 | ebi.ac.uk/ena | Mouth | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184073 | ebi.ac.uk/ena | Mouth | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184080 | ebi.ac.uk/ena | Mouth | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184043 | ebi.ac.uk/ena | Laryngopharynx | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184086 | ebi.ac.uk/ena | Laryngopharynx | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184058 | ebi.ac.uk/ena | Laryngopharynx | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184057 | ebi.ac.uk/ena | Laryngopharynx | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184091 | ebi.ac.uk/ena | Oropharynx | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184036 | ebi.ac.uk/ena | Oropharynx | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184041 | ebi.ac.uk/ena | Oropharynx | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184077 | ebi.ac.uk/ena | Oropharynx | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184035 | ebi.ac.uk/ena | Tongue | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184054 | ebi.ac.uk/ena | Tongue | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR184060 | ebi.ac.uk/ena | Tongue | Homo sapiens | NA | Head and Neck squamous cell carcinoma |
ERR842916 | ebi.ac.uk/ena | Cystic Duct | Homo sapiens | NA | Cystic Duct |
ERR842904 | ebi.ac.uk/ena | Cystic Duct | Homo sapiens | NA | Cystic Duct |
ERR842905 | ebi.ac.uk/ena | Cystic Duct | Homo sapiens | NA | Cystic Duct |
ERR842906 | ebi.ac.uk/ena | Cystic Duct | Homo sapiens | NA | Cystic Duct |
ERR842917 | ebi.ac.uk/ena | Gallbladder | Homo sapiens | NA | Gallbladder |
ERR842903 | ebi.ac.uk/ena | Gallbladder | Homo sapiens | NA | Gallbladder |
ERR842911 | ebi.ac.uk/ena | Gallbladder | Homo sapiens | NA | Gallbladder |
ERR842914 | ebi.ac.uk/ena | Gallbladder | Homo sapiens | NA | Gallbladder |
ERR696685 | ebi.ac.uk/ena | Adrenal glands | Homo sapiens | NA | Pheochromocytoma, Adrenal glands |
ERR696686 | ebi.ac.uk/ena | Adrenal glands | Homo sapiens | NA | Pheochromocytoma, Adrenal glands |
ERR696687 | ebi.ac.uk/ena | Adrenal glands | Homo sapiens | NA | Pheochromocytoma, Adrenal glands |
ERR696688 | ebi.ac.uk/ena | Adrenal glands | Homo sapiens | NA | Pheochromocytoma, Adrenal glands |
TCGA-FP-7829-11A-01R-2055-13 | browser.cghub.ucsc.edu | Stomach | Homo sapiens | NA | Healthy Stomach Tissue from Cancer Patients |
TCGA-BR-7716-11A-01R-2055-13 | browser.cghub.ucsc.edu | Stomach | Homo sapiens | NA | Healthy Stomach Tissue from Cancer Patients |
TCGA-FP-7735-11A-01R-2055-13 | browser.cghub.ucsc.edu | Stomach | Homo sapiens | NA | Healthy Stomach Tissue from Cancer Patients |
TCGA-BR-7704-11A-01R-2055-13 | browser.cghub.ucsc.edu | Stomach | Homo sapiens | NA | Healthy Stomach Tissue from Cancer Patients |
TCGA-BR-8592-01A-11R-2402-13 | browser.cghub.ucsc.edu | Stomach | Homo sapiens | NA | Stomach Adenocarcinoma |
TCGA-BR-A4QM-01A-12R-A252-13 | browser.cghub.ucsc.edu | Stomach | Homo sapiens | NA | Stomach Adenocarcinoma |
TCGA-BR-4188-01A-01R-1131-13 | browser.cghub.ucsc.edu | Stomach | Homo sapiens | NA | Stomach Adenocarcinoma |
TCGA-BR-8485-01A-11R-2402-13 | browser.cghub.ucsc.edu | Stomach | Homo sapiens | NA | Stomach Adenocarcinoma |
SRR1573445 | ncbi.nlm.nih.gov/sra | Kidney | Mus musculus | 0 day after folic acid injection | Kidney |
SRR1573446 | ncbi.nlm.nih.gov/sra | Kidney | Mus musculus | 0 day after folic acid injection | Kidney |
SRR1573448 | ncbi.nlm.nih.gov/sra | Kidney | Mus musculus | 1 day after folic acid injection | Kidney |
SRR1573449 | ncbi.nlm.nih.gov/sra | Kidney | Mus musculus | 1 day after folic acid injection | Kidney |
SRR1573463 | ncbi.nlm.nih.gov/sra | Kidney | Mus musculus | 28 day after folic acid injection | Kidney |
SRR1573464 | ncbi.nlm.nih.gov/sra | Kidney | Mus musculus | 28 day after folic acid injection | Kidney |
SRR1573465 | ncbi.nlm.nih.gov/sra | Kidney | Mus musculus | 28 day after folic acid injection | Kidney |
SRR1743172 | ncbi.nlm.nih.gov/sra | CD8+ T cells | Mus musculus | NA | CD8+ T cells |
SRR1743173 | ncbi.nlm.nih.gov/sra | CD8+ T cells | Mus musculus | NA | CD8+ T cells |
SRR1743174 | ncbi.nlm.nih.gov/sra | CD8+ T cells | Mus musculus | genotype: miR-150-/- | CD8+ T cells |
SRR1743175 | ncbi.nlm.nih.gov/sra | CD8+ T cells | Mus musculus | genotype: miR-150-/- | CD8+ T cells |
SRR1187142 | ncbi.nlm.nih.gov/sra | Heart | Mus musculus | NA | Heart |
SRR1187143 | ncbi.nlm.nih.gov/sra | Heart | Mus musculus | NA | Heart |
SRR1187179 | ncbi.nlm.nih.gov/sra | Heart | Mus musculus | NA | Heart |
SRR1187180 | ncbi.nlm.nih.gov/sra | Heart | Mus musculus | NA | Heart |
SRR553584 | ncbi.nlm.nih.gov/sra | Heart | Mus musculus | NA | Heart |
SRR553585 | ncbi.nlm.nih.gov/sra | Kidney | Mus musculus | NA | Kidney |
SRR553586 | ncbi.nlm.nih.gov/sra | Testis | Mus musculus | NA | Testis |
SRR2962613 | ncbi.nlm.nih.gov/sra | MIN6 | Mus musculus | NA | Pancreas |
SRR2962614 | ncbi.nlm.nih.gov/sra | MIN6 | Mus musculus | NA | Pancreas |
SRR2962615 | ncbi.nlm.nih.gov/sra | MIN6 | Mus musculus | NA | Pancreas |
SRR1594152 | ncbi.nlm.nih.gov/sra | Serum | Mus musculus | NA | Serum |
SRR1594153 | ncbi.nlm.nih.gov/sra | Liver | Mus musculus | NA | Liver |
SRR2962620 | ncbi.nlm.nih.gov/sra | Liver | Mus musculus | NA | Liver |
SRR2531927 | ncbi.nlm.nih.gov/sra | Brain | Mus musculus | NA | Brain, Hippocampus |
SRR2531928 | ncbi.nlm.nih.gov/sra | Brain | Mus musculus | NA | Brain, Hippocampus |
SRR2531936 | ncbi.nlm.nih.gov/sra | Brain | Mus musculus | NA | Brain, Hippocampus |
SRR2531937 | ncbi.nlm.nih.gov/sra | Brain | Mus musculus | NA | Brain, Hippocampus |
SRR638657 | ncbi.nlm.nih.gov/sra | Lung | Mus musculus | NA | Lung |
SRR638661 | ncbi.nlm.nih.gov/sra | Lung | Mus musculus | NA | Adenocarcinoma |
SRR1817827 | ncbi.nlm.nih.gov/sra | Myoblast | Mus musculus | Old | Muscle |
SRR1817828 | ncbi.nlm.nih.gov/sra | Myoblast | Mus musculus | Old | Muscle |
SRR1817829 | ncbi.nlm.nih.gov/sra | Myoblast | Mus musculus | Old | Muscle |
SRR1817830 | ncbi.nlm.nih.gov/sra | Myoblast | Mus musculus | Old | Muscle |
SRR1817831 | ncbi.nlm.nih.gov/sra | Myoblast | Mus musculus | Young | Muscle |
SRR1817832 | ncbi.nlm.nih.gov/sra | Myoblast | Mus musculus | Young | Muscle |
SRR1817833 | ncbi.nlm.nih.gov/sra | Myoblast | Mus musculus | Young | Muscle |
SRR1817834 | ncbi.nlm.nih.gov/sra | Myoblast | Mus musculus | Young | Muscle |
modENCODE_2823 | modencode.org | Spermatids | C. elegans | NA | Adult-Males-70-hr-post-L1-stage-larvae, CB1489 |
modENCODE_2829 | modencode.org | Spermatids | C. elegans | NA | Adult-Males-70-hr-post-L1-stage-larvae, CB1489 |
modENCODE_2832 | modencode.org | Unfertilized-oocytes | C. elegans | NA | Adult-Males-70-hr-post-L1-stage-larvae, BA1 |
modENCODE_2830 | modencode.org | Unfertilized-oocytes | C. elegans | NA | Adult-Males-70-hr-post-L1-stage-larvae, BA1 |
modENCODE_6496 | modencode.org | Whole-organism | C. elegans | NA | Embryos-mixed-stages-N2 |
modENCODE_2826 | modencode.org | Whole-organism | C. elegans | NA | Embryos-mixed-stages-N2 |
modENCODE_635 | modencode.org | Whole-organism | C. elegans | NA | L1-4-hrs-post-L1-stage-larvae-N2 |
modENCODE_6498 | modencode.org | Whole-organism | C. elegans | NA | L2-14-hrs-post-L1-stage-larvae-N2 |
modENCODE_637 | modencode.org | Whole-organism | C. elegans | NA | L3-25-hrs-post-L1-stage-larvae-N2 |
modENCODE_6500 | modencode.org | Whole-organism | C. elegans | NA | L4-36-hrs-post-L1-stage-larvae |
modENCODE_2825 | modencode.org | Whole-organism | C. elegans | NA | Mixed-Population-Worms-N2 |
modENCODE_2828 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-SS104 |
modENCODE_2822 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-SS104 |
modENCODE_2831 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-N2 |
modENCODE_2821 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-GR1373 |
modENCODE_2827 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-GR1373 |
modENCODE_639 | modencode.org | Whole-organism | C. elegans | NA | Young-adult-48-hrs-post-L1-stage-larvae |
modENCODE_640 | modencode.org | Whole-organism | C. elegans | NA | Young-Adult-him-8(e1489)-Males |
GSM280082 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | NA | Adult-Female |
GSM609231 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | AGO1 immunoprecipitate | Adult-Female, Ago2-414 mutant |
GSM609237 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | NA | Adult-Female, Ago2-414 mutant |
GSM609230 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | AGO1 immunoprecipitate | Adult-Female-Canton-S |
GSM609246 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | NA | Adult-Female-Canton-S |
GSM609236 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | AGO1 immunoprecipitate | Adult-Female-Dcr-2L811fsX |
GSM609245 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | NA | Adult-Female-Dcr-2L811fsX |
GSM280083 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | NA | Adult-Female-Dcr-2L811fsX |
GSM280084 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | NA | Adult-Female, loqs mutant f00791 |
GSM609233 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | NA | Adult-Female, r2d2 |
GSM280086 | ncbi.nlm.nih.gov/geo | Adult-Ovaries | Drosophila melanogaster | AGO2 immunoprecipitate | Adult, yellow cinnabar brown speck |
GSM280085 | ncbi.nlm.nih.gov/geo | Adult-testes | Drosophila melanogaster | NA | Adult-Male-Oregon-R |
GSM286613 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-0-1-hr-Canton-S |
GSM286604 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-0-1-hr-Canton-S |
GSM364902 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-12-24-hr-Canton-S |
GSM609229 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-14-24-hr, yellow cinnabar brown speck |
GSM609240 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-2-18-hr-w1118 |
GSM609239 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-2-18-hr-w1118 |
GSM609238 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-2-4-hr, yellow cinnabar brown speck |
GSM286605 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-2-6-hr-Canton-S |
GSM286606 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-2-6-hr-Canton-S |
GSM286611 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-6-10-hr-Canton-S |
GSM286607 | ncbi.nlm.nih.gov/geo | Embryo | Drosophila melanogaster | NA | Embryo-6-10-hr-Canton-S |
GSM286603 | ncbi.nlm.nih.gov/geo | Female-body | Drosophila melanogaster | NA | Adult-Female-Canton-S |
GSM399106 | ncbi.nlm.nih.gov/geo | Female-body | Drosophila melanogaster | NA | Adult-Female-Canton-S |
GSM609247 | ncbi.nlm.nih.gov/geo | Female-heads | Drosophila melanogaster | NA | Adult-Female-Canton-S |
GSM609251 | ncbi.nlm.nih.gov/geo | Female-heads | Drosophila melanogaster | NA | Adult-Female-Canton-S |
GSM240749 | ncbi.nlm.nih.gov/geo | Female-heads | Drosophila melanogaster | NA | Adult-Female-Canton-S |
GSM322533 | ncbi.nlm.nih.gov/geo | Female-heads | Drosophila melanogaster | NA | Adult-Female-Canton-S |
GSM399105 | ncbi.nlm.nih.gov/geo | Imaginal-disc/Brain | Drosophila melanogaster | NA | Adult-Male-Canton-S |
GSM275691 | ncbi.nlm.nih.gov/geo | Imaginal-disc/Brain | Drosophila melanogaster | NA | Adult-Male-Canton-S |
GSM286602 | ncbi.nlm.nih.gov/geo | Male-body | Drosophila melanogaster | NA | Adult-Male-Canton-S |
GSM399107 | ncbi.nlm.nih.gov/geo | Male-body | Drosophila melanogaster | NA | Adult-Male-Canton-S |
GSM609234 | ncbi.nlm.nih.gov/geo | Male-body | Drosophila melanogaster | NA | Adult-Male-Canton-S |
GSM322543 | ncbi.nlm.nih.gov/geo | Male-heads | Drosophila melanogaster | NA | Adult-Male-Canton-S |
GSM286601 | ncbi.nlm.nih.gov/geo | Male-heads | Drosophila melanogaster | NA | Adult-Male-Canton-S |
GSM609224 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Adult-Female,eclosion +1 day, yellow cinnabar brown speck |
GSM609223 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Adult-Male,eclosion +1 day, yellow cinnabar brown speck |
GSM360256 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Larvae-1st-instar-Canton-S |
GSM360257 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Larvae-1st-instar-Canton-S |
GSM322208 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Larvae-3rd-instar-Canton-S |
GSM322245 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Larvae-3rd-instar-Canton-S |
GSM360260 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Pupae-0-1-day-Canton-S |
GSM360262 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Pupae-0-2-day-Canton-S |
GSM322219 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Pupae-2-4-day-Canton-S |
GSM322338 | ncbi.nlm.nih.gov/geo | Whole-organism | Drosophila melanogaster | NA | Pupae-2-4-day-Canton-S |
GSM980238_Rep2 | ncbi.nlm.nih.gov/geo | 1182-4H | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM609221_Rep1 | ncbi.nlm.nih.gov/geo | 1182-4H | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM609235 | ncbi.nlm.nih.gov/geo | CME-L1 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM609227_Rep2 | ncbi.nlm.nih.gov/geo | CME-W1-Cl.8+ | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM609226_Rep1 | ncbi.nlm.nih.gov/geo | CME-W1-Cl.8+ | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM919268 | ncbi.nlm.nih.gov/geo | CME-W2 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM919269 | ncbi.nlm.nih.gov/geo | CME-W2 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM930140 | ncbi.nlm.nih.gov/geo | GM2 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM609219 | ncbi.nlm.nih.gov/geo | GM2 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM272653 | ncbi.nlm.nih.gov/geo | KC | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM609243 | ncbi.nlm.nih.gov/geo | KC | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM609244 | ncbi.nlm.nih.gov/geo | KC | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM399110 | ncbi.nlm.nih.gov/geo | Kc167 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM399100_Rep1 | ncbi.nlm.nih.gov/geo | Kc167 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM399101_Rep2 | ncbi.nlm.nih.gov/geo | Kc167 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM919266 | ncbi.nlm.nih.gov/geo | mbn2 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM919267 | ncbi.nlm.nih.gov/geo | mbn2 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM980233 | ncbi.nlm.nih.gov/geo | ML-DmBG1-c1 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM609222 | ncbi.nlm.nih.gov/geo | ML-DmBG1-c1 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM609225_Rep1 | ncbi.nlm.nih.gov/geo | ML-DmBG3-c2 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM980234_Rep2 | ncbi.nlm.nih.gov/geo | ML-DmBG3-c2 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM919259 | ncbi.nlm.nih.gov/geo | ML-DmD16-c3 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM609249_Rep1 | ncbi.nlm.nih.gov/geo | ML-DmD21 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM609220_Rep2 | ncbi.nlm.nih.gov/geo | ML-DmD21 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM609250_Rep2 | ncbi.nlm.nih.gov/geo | ML-DmD32 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM980237_Rep1 | ncbi.nlm.nih.gov/geo | ML-DmD32 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM919265 | ncbi.nlm.nih.gov/geo | ML-DmD8 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM919264 | ncbi.nlm.nih.gov/geo | ML-DmD8 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM609248_Rep2 | ncbi.nlm.nih.gov/geo | ML-DmD9 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM980236_Rep1 | ncbi.nlm.nih.gov/geo | ML-DmD9 | Drosophila melanogaster | NA | Larvae-3rd-instar |
GSM385821_Rep4 | ncbi.nlm.nih.gov/geo | OvarySomaticSheet | Drosophila melanogaster | NA | Adult |
GSM385748_Rep3 | ncbi.nlm.nih.gov/geo | OvarySomaticSheet | Drosophila melanogaster | NA | Adult |
GSM385744_Rep1 | ncbi.nlm.nih.gov/geo | OvarySomaticSheet | Drosophila melanogaster | NA | Adult |
GSM385822_Rep2 | ncbi.nlm.nih.gov/geo | OvarySomaticSheet | Drosophila melanogaster | NA | Adult |
GSM919262 | ncbi.nlm.nih.gov/geo | S1 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM272651 | ncbi.nlm.nih.gov/geo | S2-DRSC and Kc167 | Drosophila melanogaster | Ecdysone exposure | Late-Embryonic-stage |
GSM609241 | ncbi.nlm.nih.gov/geo | S2 | Drosophila melanogaster | Ecdysone exposure | Late-Embryonic-stage |
GSM609242 | ncbi.nlm.nih.gov/geo | S2 | Drosophila melanogaster | Ecdysone exposure | Late-Embryonic-stage |
GSM371638 | ncbi.nlm.nih.gov/geo | S2 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM272652 | ncbi.nlm.nih.gov/geo | S2 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM280088 | ncbi.nlm.nih.gov/geo | S2 | Drosophila melanogaster | AGO1 immunoprecipitate | Late-Embryonic-stage |
GSM280087 | ncbi.nlm.nih.gov/geo | S2 | Drosophila melanogaster | AGO2 immunoprecipitate | Late-Embryonic-stage |
GSM609228 | ncbi.nlm.nih.gov/geo | S2-DRSC | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM980235 | ncbi.nlm.nih.gov/geo | S2-DRSC | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM919263 | ncbi.nlm.nih.gov/geo | S2-HDR | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM361908 | ncbi.nlm.nih.gov/geo | S2R+ | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM343833 | ncbi.nlm.nih.gov/geo | S2R+ | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM343832 | ncbi.nlm.nih.gov/geo | S2R+ | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM980232 | ncbi.nlm.nih.gov/geo | Sg4 | Drosophila melanogaster | NA | Late-Embryonic-stage |
GSM609218 | ncbi.nlm.nih.gov/geo | Sg4 | Drosophila melanogaster | NA | Late-Embryonic-stage |