LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Gene
miRNA
Score
DIANA Links
WDR11-AS1
hsa-miR-940
0.945
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456120
Biotype: antisense
Gene id: ENSG00000227165
Gene Name: WDR11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-399
0.028
2
6mer
307-311
0.008
4
7mer
262-267
0.008
1
7mer
266-272
0.007
3
7mer
701-722
0.007
1
XLOC_011448
hsa-miR-940
0.944
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10185-10195
0.017
7
7mer
4208-4221
0.016
4
8mer
1151-1173
0.011
1
6mer
9762-9778
0.005
3
7mer
2602-2616
0.003
0
8mer
2467-2482
0.002
0
6mer
2949-2974
0.001
1
6mer
6201-6221
0.001
0
XLOC_003444
hsa-miR-940
0.944
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007469
Biotype: transcript isomorph
Gene id: XLOC_003444
Gene Name: XLOC_003444
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-71
0.036
3
7mer
524-544
0.011
0
7mer
305-318
0.008
1
6mer
240-259
0.003
Not Conserved
AC009404.2
hsa-miR-940
0.943
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420330
Biotype: lincRNA
Gene id: ENSG00000236255
Gene Name: AC009404.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3010-3031
0.043
0
6mer
3043-3063
0.010
3
6mer
364-391
0.003
1
XLOC_003438
hsa-miR-940
0.943
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007969
Biotype: transcript isomorph
Gene id: XLOC_003438
Gene Name: XLOC_003438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
493-514
0.036
1
6mer
729-745
0.005
1
6mer
2115-2142
0.004
0
6mer
2205-2215
0.004
0
6mer
575-586
0.003
Not Conserved
6mer
1925-1935
0.003
0
6mer
1400-1408
0.003
0
XLOC_013272
hsa-miR-940
0.943
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-325
0.028
0
7mer
817-830
0.018
0
7mer
1542-1558
0.004
Not Conserved
6mer
1689-1708
0.003
Not Conserved
6mer
1113-1134
0.002
Not Conserved
6mer
971-990
0.001
Not Conserved
RP11-114H24.3
hsa-miR-940
0.943
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569892
Biotype: lincRNA
Gene id: ENSG00000261403
Gene Name: RP11-114H24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-59
0.057
0
CTC-260E6.6
hsa-miR-940
0.943
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585498
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
642-664
0.032
0
7mer
629-635
0.012
0
8mer
367-378
0.011
0
8mer+wobble
253-275
0.003
0
RP11-17G12.2
hsa-miR-940
0.943
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540410
Biotype: antisense
Gene id: ENSG00000256897
Gene Name: RP11-17G12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-74
0.024
3
7mer
4-24
0.016
5
7mer
79-84
0.016
1
LINC01002
hsa-miR-940
0.941
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587051
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
903-926
0.011
0
7mer
1353-1368
0.009
1
8mer
309-324
0.007
0
7mer
541-564
0.005
0
8mer
412-429
0.005
0
6mer
1417-1432
0.005
1
8mer
648-670
0.004
0
7mer
408-429
0.004
0
6mer
1737-1753
0.003
0
6mer
1194-1201
0.003
0
XLOC_010255
hsa-miR-940
0.941
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020990
Biotype: transcript isomorph
Gene id: XLOC_010255
Gene Name: XLOC_010255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-265
0.045
1
6mer
55-68
0.007
1
6mer
470-490
0.004
1
RP11-267M23.3
hsa-miR-940
0.941
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521010
Biotype: antisense
Gene id: ENSG00000254315
Gene Name: RP11-267M23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-387
0.047
1
6mer
188-200
0.009
3
TSIX
hsa-miR-940
0.940
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-616
0.006
0
7mer
31541-31557
0.005
2
7mer
26227-26241
0.005
1
7mer
25696-25702
0.005
2
8mer
12244-12257
0.005
Not Conserved
7mer
18601-18621
0.003
1
6mer
30503-30518
0.003
4
8mer
6617-6632
0.003
1
8mer
24265-24271
0.003
1
8mer
15692-15713
0.003
Not Conserved
6mer
32194-32201
0.002
1
6mer
26541-26558
0.002
2
6mer
22974-22981
0.002
1
6mer
26110-26128
0.002
1
6mer
25312-25324
0.002
1
6mer
11767-11776
0.001
Not Conserved
6mer
32277-32281
0.001
1
6mer
32226-32235
0.001
1
6mer
8837-8856
0.001
0
6mer
25751-25766
0.001
1
6mer
11922-11942
0.001
Not Conserved
6mer
14577-14600
0.001
Not Conserved
XLOC_004924
hsa-miR-940
0.939
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-457
0.010
3
7mer
10819-10840
0.007
1
8mer
6854-6876
0.007
0
9mer
6733-6748
0.007
0
7mer
2422-2439
0.005
1
7mer
2652-2673
0.004
1
6mer
11170-11183
0.004
1
7mer
3587-3611
0.004
1
6mer
945-961
0.003
1
7mer
7359-7380
0.002
1
7mer
3339-3346
0.002
Not Conserved
6mer
3314-3330
0.000
1
LINC00710
hsa-miR-940
0.938
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619619
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
792-799
0.023
0
8mer
674-698
0.018
5
7mer
428-444
0.008
1
6mer
752-770
0.006
5
CTC-459F4.3
hsa-miR-940
0.937
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1538-1555
0.039
0
6mer
1986-2003
0.008
0
6mer
1259-1284
0.008
0
XLOC_009474
hsa-miR-940
0.937
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4856-4863
0.024
8
7mer
3790-3797
0.008
8
6mer
112-123
0.008
5
7mer
1257-1268
0.005
3
6mer
6142-6154
0.004
8
6mer
4235-4239
0.003
6
6mer
2354-2366
0.002
5
RP11-2E17.2
hsa-miR-940
0.936
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568836
Biotype: lincRNA
Gene id: ENSG00000259967
Gene Name: RP11-2E17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-316
0.034
1
8mer
444-462
0.021
0
LINC00861
hsa-miR-940
0.936
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500989
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4679-4686
0.020
0
7mer
5106-5114
0.012
1
7mer
873-878
0.005
1
7mer
3540-3561
0.005
0
6mer
437-453
0.005
0
7mer
722-730
0.004
0
6mer
389-405
0.004
0
RP11-367N14.3
hsa-miR-940
0.935
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608204
Biotype: lincRNA
Gene id: ENSG00000272744
Gene Name: RP11-367N14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-321
0.046
3
7mer
539-545
0.008
0
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