LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Gene
miRNA
Score
DIANA Links
LINC00649
hsa-miR-940
0.953
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000608431
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-247
0.060
1
RP11-5P4.1
hsa-miR-940
0.953
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420285
Biotype: lincRNA
Gene id: ENSG00000229537
Gene Name: RP11-5P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-75
0.060
7
WDR11-AS1
hsa-miR-940
0.953
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598981
Biotype: antisense
Gene id: ENSG00000227165
Gene Name: WDR11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-399
0.028
2
6mer
307-311
0.008
4
7mer
262-267
0.008
1
7mer
701-722
0.007
1
7mer
266-272
0.007
3
6mer
2164-2181
0.003
1
RP11-495K9.3
hsa-miR-940
0.952
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508505
Biotype: lincRNA
Gene id: ENSG00000248703
Gene Name: RP11-495K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-15
0.024
1
8mer
1185-1200
0.022
1
6mer
903-911
0.004
0
6mer
170-196
0.004
0
8mer
528-545
0.003
Not Conserved
6mer
438-452
0.002
0
RP4-671O14.7
hsa-miR-940
0.952
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18741-18760
0.017
0
7mer
18946-18965
0.016
0
7mer
4103-4109
0.006
1
7mer
7208-7213
0.004
1
7mer
6610-6624
0.003
Not Conserved
9mer
6432-6455
0.002
Not Conserved
6mer
18050-18062
0.002
0
7mer
8894-8915
0.002
Not Conserved
6mer
12065-12091
0.001
1
6mer
9425-9446
0.001
0
6mer
7986-7998
0.001
0
6mer
7592-7609
0.001
0
6mer
10481-10499
0.001
1
8mer+wobble
7812-7828
0.001
0
6mer
9254-9279
0.000
Not Conserved
RP11-5P4.1
hsa-miR-940
0.951
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420659
Biotype: lincRNA
Gene id: ENSG00000229537
Gene Name: RP11-5P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-75
0.059
7
L29074.3
hsa-miR-940
0.951
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000456072
Biotype: antisense
Gene id: ENSG00000227083
Gene Name: L29074.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-175
0.047
4
7mer
369-374
0.012
1
LEPREL1-AS1
hsa-miR-940
0.951
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412203
Biotype: antisense
Gene id: ENSG00000225764
Gene Name: LEPREL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-563
0.029
0
8mer
591-614
0.027
Not Conserved
6mer
107-130
0.004
1
RP11-5P4.1
hsa-miR-940
0.951
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425352
Biotype: lincRNA
Gene id: ENSG00000229537
Gene Name: RP11-5P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-75
0.059
7
LL22NC03-22D1.1
hsa-miR-940
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28580-28587
0.013
0
7mer
17929-17935
0.006
2
6mer
596-614
0.004
1
7mer
24637-24653
0.003
0
7mer
20165-20183
0.003
0
7mer
16257-16282
0.003
0
6mer
975-990
0.003
2
6mer
13702-13712
0.002
0
7mer
13763-13768
0.002
0
6mer
5877-5897
0.002
2
8mer
16020-16031
0.002
Not Conserved
6mer
19754-19764
0.002
0
6mer
26608-26633
0.002
1
6mer
7003-7028
0.001
3
6mer
18270-18287
0.001
0
6mer
10085-10093
0.001
0
6mer
25366-25382
0.001
0
6mer
26729-26756
0.001
1
6mer
12586-12605
0.001
1
6mer
6257-6274
0.001
1
6mer
1123-1145
0.001
0
6mer
27570-27596
0.001
0
6mer
23372-23394
0.001
1
6mer
23456-23467
0.001
1
6mer
2481-2489
0.001
Not Conserved
XLOC_008826
hsa-miR-940
0.950
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-85
0.019
0
7mer
4334-4344
0.019
0
7mer
4368-4373
0.013
0
7mer
3360-3365
0.008
0
AC012594.1
hsa-miR-940
0.950
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610954
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
792-799
0.014
0
7mer
99-113
0.013
0
8mer
825-832
0.011
Not Conserved
8mer
125-145
0.008
Not Conserved
9mer
809-816
0.007
0
6mer
24-48
0.007
2
bP-2189O9.3
hsa-miR-940
0.950
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
530-541
0.059
0
XLOC_001265
hsa-miR-940
0.949
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001882
Biotype: transcript isomorph
Gene id: XLOC_001265
Gene Name: XLOC_001265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7960-7975
0.016
1
8mer
7266-7283
0.013
2
7mer
7921-7929
0.007
1
7mer
6660-6666
0.004
1
7mer
6333-6354
0.004
1
7mer
1969-1980
0.003
1
6mer
2256-2283
0.002
1
6mer
3534-3551
0.002
6
7mer
6096-6123
0.002
0
7mer
2196-2207
0.002
2
7mer
4186-4200
0.002
0
6mer
3690-3702
0.001
0
8mer+mismatch
4963-4987
0.001
1
RP11-727A23.10
hsa-miR-940
0.948
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530045
Biotype: antisense
Gene id: ENSG00000255234
Gene Name: RP11-727A23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2364-2387
0.029
0
7mer
452-473
0.008
2
7mer
2594-2608
0.008
0
7mer
1721-1737
0.005
0
8mer
977-983
0.004
Not Conserved
6mer
1868-1888
0.003
0
6mer
1941-1954
0.002
0
RP11-299G20.3
hsa-miR-940
0.948
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558696
Biotype: antisense
Gene id: ENSG00000259764
Gene Name: RP11-299G20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-580
0.050
1
7mer
309-330
0.008
1
RP11-441O15.3
hsa-miR-940
0.946
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416191
Biotype: lincRNA
Gene id: ENSG00000224934
Gene Name: RP11-441O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2140-2146
0.010
1
8mer
221-248
0.010
1
6mer
99-103
0.010
6
7mer
2581-2601
0.008
1
7mer
280-297
0.005
1
6mer
2556-2575
0.004
1
7mer
1504-1512
0.004
1
6mer
665-679
0.004
2
6mer
220-240
0.003
2
XLOC_011150
hsa-miR-940
0.945
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022896
Biotype: transcript isomorph
Gene id: XLOC_011150
Gene Name: XLOC_011150
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-36
0.030
1
7mer
190-212
0.027
1
AC012593.1
hsa-miR-940
0.945
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
871-882
0.042
1
7mer
35-62
0.016
0
RP11-731J8.2
hsa-miR-940
0.945
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
320-326
0.016
3
6mer
30-47
0.010
6
8mer
2940-2951
0.008
0
6mer
6720-6735
0.006
3
6mer
3548-3554
0.004
5
7mer
536-554
0.004
1
6mer
489-498
0.004
0
6mer
4571-4593
0.002
0
6mer
3792-3809
0.001
1
6mer
1207-1227
0.001
0
6mer
3050-3062
0.001
2
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