LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Gene
miRNA
Score
DIANA Links
RP11-344E13.3
hsa-miR-940
0.966
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433763
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-305
0.066
0
AC073130.1
hsa-miR-940
0.965
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454897
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-366
0.041
0
8mer
384-390
0.024
1
LINC00963
hsa-miR-940
0.965
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419300
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9370-9388
0.018
3
7mer
9506-9511
0.011
2
7mer
292-307
0.009
1
7mer
8773-8794
0.006
0
8mer
4813-4830
0.004
1
7mer
8915-8929
0.004
0
7mer
3468-3489
0.003
0
6mer
6058-6075
0.003
4
6mer
6217-6235
0.002
1
6mer
8915-8925
0.002
0
8mer
3047-3069
0.002
0
7mer
3293-3312
0.001
Not Conserved
6mer
2452-2471
0.001
2
6mer
4848-4870
0.000
2
FAM224B
hsa-miR-940
0.965
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000458667
Biotype: lincRNA
Gene id: ENSG00000230663
Gene Name: FAM224B
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1504-1518
0.031
0
7mer
1793-1815
0.027
0
6mer
344-351
0.005
Not Conserved
6mer
1458-1476
0.002
Not Conserved
RP11-318G21.4
hsa-miR-940
0.964
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000435281
Biotype: lincRNA
Gene id: ENSG00000233379
Gene Name: RP11-318G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-103
0.032
0
8mer
139-154
0.028
0
7mer
5-11
0.004
Not Conserved
XLOC_003038
hsa-miR-940
0.963
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-100
0.064
0
RP11-757G1.6
hsa-miR-940
0.963
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-165
0.053
0
6mer
2640-2649
0.011
0
ERVK13-1
hsa-miR-940
0.962
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000619862
Biotype: retained_intron
Gene id: ENSG00000260565
Gene Name: ERVK13-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-36
0.038
0
7mer
3983-3988
0.005
Not Conserved
7mer
96-108
0.005
Not Conserved
7mer
335-358
0.005
Not Conserved
7mer
2755-2763
0.004
Not Conserved
7mer
303-312
0.003
Not Conserved
6mer
4081-4093
0.002
Not Conserved
6mer
3492-3509
0.001
Not Conserved
6mer
3967-3973
0.001
Not Conserved
XLOC_009308
hsa-miR-940
0.962
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019510
Biotype: transcript isomorph
Gene id: XLOC_009308
Gene Name: XLOC_009308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-523
0.054
0
6mer
484-503
0.010
0
RP11-142O6.1
hsa-miR-940
0.961
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584382
Biotype: sense_intronic
Gene id: ENSG00000266371
Gene Name: RP11-142O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2619-2640
0.035
1
7mer
852-867
0.017
0
6mer
2123-2144
0.006
0
6mer
1331-1336
0.005
0
RP3-492J12.2
hsa-miR-940
0.960
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000610729
Biotype: lincRNA
Gene id: ENSG00000274961
Gene Name: RP3-492J12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-226
0.023
10
7mer
152-178
0.023
6
8mer
499-525
0.017
1
RP11-391M1.4
hsa-miR-940
0.959
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607057
Biotype: lincRNA
Gene id: ENSG00000272452
Gene Name: RP11-391M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-181
0.030
3
7mer
1875-1887
0.018
2
7mer
1449-1470
0.014
1
RP11-573D15.8
hsa-miR-940
0.959
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596329
Biotype: antisense
Gene id: ENSG00000197099
Gene Name: RP11-573D15.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-59
0.032
6
8mer
412-435
0.018
Not Conserved
7mer
162-183
0.010
0
6mer
614-627
0.003
0
LINC00894
hsa-miR-940
0.957
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452864
Biotype: antisense
Gene id: ENSG00000235703
Gene Name: LINC00894
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-84
0.058
0
8mer
326-340
0.004
Not Conserved
CTA-929C8.9
hsa-miR-940
0.957
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15334-15349
0.014
1
8mer
190-212
0.008
0
8mer
21553-21561
0.005
1
7mer
15141-15161
0.005
1
7mer
17718-17738
0.003
0
7mer
10124-10138
0.003
1
6mer
618-643
0.003
Not Conserved
6mer
24747-24764
0.003
1
7mer
16050-16063
0.003
0
6mer
8593-8608
0.002
1
6mer
7099-7122
0.002
1
6mer
14571-14577
0.002
1
6mer
23403-23410
0.002
1
6mer
7735-7761
0.002
1
6mer
14780-14795
0.001
0
6mer
20109-20129
0.001
0
6mer
12198-12218
0.001
0
6mer
19080-19091
0.001
1
6mer
16144-16157
0.001
0
AF131216.5
hsa-miR-940
0.957
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000525867
Biotype: antisense
Gene id: ENSG00000255020
Gene Name: AF131216.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-42
0.056
1
8mer
564-580
0.006
0
LINC01224
hsa-miR-940
0.955
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596763
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-326
0.037
1
7mer
222-240
0.024
1
CTA-941F9.10
hsa-miR-940
0.955
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9726-9752
0.005
3
7mer
19555-19576
0.005
1
7mer
7856-7877
0.004
1
7mer
12099-12120
0.004
1
7mer
11056-11076
0.004
1
8mer
13523-13545
0.003
1
7mer
3495-3515
0.003
0
7mer
10118-10138
0.003
1
7mer
19855-19876
0.003
0
6mer
17015-17038
0.002
1
7mer
19210-19224
0.002
1
6mer
10394-10414
0.002
2
8mer
3636-3651
0.002
0
6mer
948-965
0.002
0
7mer
2887-2907
0.002
0
6mer
21552-21569
0.002
1
6mer
1560-1567
0.002
Not Conserved
6mer
1982-1995
0.002
0
6mer
1211-1232
0.002
0
7mer
2862-2882
0.001
0
8mer
19696-19711
0.001
0
6mer
2156-2175
0.001
0
7mer
2181-2201
0.001
Not Conserved
6mer
12935-12950
0.001
0
6mer
19257-19282
0.001
1
6mer
10448-10455
0.001
0
6mer
1653-1675
0.001
Not Conserved
7mer
11202-11216
0.001
1
6mer
11202-11212
0.001
1
6mer
15268-15293
0.001
0
F10-AS1
hsa-miR-940
0.954
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000424635
Biotype: antisense
Gene id: ENSG00000231882
Gene Name: F10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-341
0.044
0
6mer
347-366
0.016
0
AC004041.2
hsa-miR-940
0.954
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000457489
Biotype: antisense
Gene id: ENSG00000223442
Gene Name: AC004041.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-387
0.060
8
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