LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Gene
miRNA
Score
DIANA Links
LINC00960
hsa-miR-940
0.975
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
33-37
0.026
1
7mer
1112-1129
0.016
1
6mer
1983-1987
0.016
1
6mer
370-384
0.012
1
LINC01125
hsa-miR-940
0.975
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605017
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-232
0.036
1
7mer
70-90
0.019
0
7mer
411-424
0.016
0
XLOC_006862
hsa-miR-940
0.975
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014788
Biotype: transcript isomorph
Gene id: XLOC_006862
Gene Name: XLOC_006862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
636-658
0.070
1
AC108488.4
hsa-miR-940
0.974
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439547
Biotype: lincRNA
Gene id: ENSG00000242282
Gene Name: AC108488.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-459
0.067
0
6mer
234-246
0.003
Not Conserved
RP11-474D1.3
hsa-miR-940
0.974
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567788
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4528-4534
0.019
2
8mer
4320-4339
0.017
Not Conserved
7mer
733-750
0.010
0
7mer
4126-4148
0.009
1
7mer
3029-3050
0.006
1
6mer
72-76
0.005
1
7mer
2384-2392
0.002
0
7mer
2896-2915
0.001
0
CTD-3195I5.5
hsa-miR-940
0.974
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572988
Biotype: lincRNA
Gene id: ENSG00000262194
Gene Name: CTD-3195I5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-60
0.058
1
7mer
461-476
0.012
2
XLOC_006390
hsa-miR-940
0.974
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013751
Biotype: transcript isomorph
Gene id: XLOC_006390
Gene Name: XLOC_006390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4498-4514
0.026
4
8mer
1646-1666
0.011
9
6mer
511-531
0.008
9
8mer
4386-4410
0.005
0
8mer
3457-3476
0.004
2
7mer
4375-4380
0.004
2
6mer
262-282
0.004
1
6mer
4147-4171
0.002
2
7mer
1221-1231
0.001
2
6mer
1744-1769
0.001
5
6mer
1289-1305
0.001
1
6mer
2385-2399
0.001
3
6mer
3398-3412
0.001
2
6mer
2090-2106
0.001
1
RP11-359B12.2
hsa-miR-940
0.973
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503602
Biotype: antisense
Gene id: ENSG00000250132
Gene Name: RP11-359B12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-242
0.044
2
7mer
2956-2980
0.019
1
7mer
1956-1969
0.004
0
6mer
732-757
0.002
2
AC073130.1
hsa-miR-940
0.973
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420594
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-237
0.040
0
8mer
255-261
0.029
1
RP5-857K21.1
hsa-miR-940
0.972
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417636
Biotype: lincRNA
Gene id: ENSG00000231709
Gene Name: RP5-857K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
563-579
0.026
0
6mer
592-606
0.022
0
6mer
194-209
0.011
0
6mer
731-757
0.010
0
XLOC_011157
hsa-miR-940
0.971
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2758-2778
0.015
0
7mer
859-866
0.011
0
9mer
518-545
0.010
0
9mer
905-930
0.008
0
9mer
980-1000
0.005
0
7mer
1305-1320
0.004
0
7mer
1145-1165
0.003
0
9mer
1585-1592
0.003
0
9mer
2101-2117
0.002
Not Conserved
6mer
937-951
0.002
0
6mer
1639-1658
0.002
0
9mer
2254-2269
0.001
Not Conserved
9mer
2307-2316
0.001
Not Conserved
6mer
1509-1529
0.001
Not Conserved
LINC01460
hsa-miR-940
0.970
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000379677
Biotype: lincRNA
Gene id: ENSG00000205334
Gene Name: LINC01460
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2326-2342
0.028
7
8mer
2111-2118
0.017
4
7mer
2076-2098
0.012
6
7mer
67-78
0.008
1
6mer
1888-1912
0.002
1
XLOC_000022
hsa-miR-940
0.970
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000807
Biotype: transcript isomorph
Gene id: XLOC_000022
Gene Name: XLOC_000022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4014-4040
0.015
1
8mer
4146-4169
0.014
1
7mer
4085-4098
0.013
2
7mer
374-383
0.011
0
7mer
1227-1237
0.005
1
7mer
875-891
0.003
0
8mer
2872-2894
0.002
1
6mer
3084-3092
0.002
1
6mer
1285-1311
0.001
1
7mer
2948-2970
0.001
0
6mer
1527-1541
0.001
0
RP11-344E13.3
hsa-miR-940
0.969
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579168
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-359
0.067
0
CTA-228A9.4
hsa-miR-940
0.969
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12115-12122
0.011
0
7mer
203-217
0.011
1
7mer
5767-5774
0.006
0
7mer
14920-14941
0.004
1
7mer
18751-18765
0.004
1
7mer
9313-9334
0.003
0
7mer
16204-16218
0.003
1
6mer
20046-20064
0.003
1
7mer
13621-13642
0.003
0
7mer
16659-16679
0.003
0
8mer
8248-8271
0.003
0
7mer
6752-6772
0.003
1
7mer
8862-8876
0.002
0
7mer
18886-18899
0.002
0
7mer
4491-4511
0.001
0
6mer
7154-7162
0.001
1
6mer
6586-6607
0.001
1
6mer
3267-3271
0.001
0
7mer
16794-16811
0.001
0
6mer
2954-2971
0.001
1
7mer
16801-16815
0.000
0
XLOC_008878
hsa-miR-940
0.969
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1815-1834
0.055
0
6mer
1261-1265
0.012
0
RP11-638I8.1
hsa-miR-940
0.968
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609439
Biotype: lincRNA
Gene id: ENSG00000272556
Gene Name: RP11-638I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-360
0.022
1
7mer
208-225
0.019
1
8mer
445-462
0.019
0
7mer
475-493
0.006
0
RP11-1143G9.5
hsa-miR-940
0.967
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4905-4927
0.043
1
7mer
593-614
0.010
1
7mer
2482-2503
0.007
1
6mer
1755-1771
0.004
1
6mer
3985-3996
0.003
1
RP11-57A19.5
hsa-miR-940
0.967
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602838
Biotype: lincRNA
Gene id: ENSG00000270118
Gene Name: RP11-57A19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-250
0.066
0
AC073130.1
hsa-miR-940
0.967
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457033
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1741-1763
0.041
0
8mer
1781-1787
0.025
1
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