Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940

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Filters

Gene
miRNA
Score
RP11-504P24.8
hsa-miR-940
0.985

Gene Details
Chromosome: 1
Transcript: ENST00000608760
Biotype: lincRNA
Gene id: ENSG00000272645
Gene Name: RP11-504P24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-211
0.021
0
7mer
416-433
0.013
1
8mer
450-465
0.011
Not Conserved
7mer
303-318
0.007
0
6mer
770-781
0.007
1
6mer
170-189
0.005
1
6mer
547-552
0.005
0
6mer
1411-1427
0.005
1
7mer
706-721
0.005
0
XLOC_006128
hsa-miR-940
0.985

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-58
0.034
1
7mer
1125-1144
0.022
0
6mer
213-236
0.015
1
6mer
288-307
0.005
0
6mer
539-559
0.004
0
LOC100133331
hsa-miR-940
0.984

Gene Details
Chromosome: 1
Transcript: NR_028327.1
Biotype: lincRNA
Gene id: NR_028327.1 (gene)
Gene Name: LOC100133331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-337
0.011
Not Conserved
7mer
435-450
0.009
0
7mer
3848-3863
0.007
0
7mer
3496-3511
0.005
Not Conserved
7mer
2218-2241
0.005
Not Conserved
6mer
4232-4248
0.004
0
6mer
3912-3927
0.004
0
8mer
2692-2707
0.004
Not Conserved
7mer
570-587
0.004
Not Conserved
8mer
1431-1450
0.003
Not Conserved
7mer
2444-2461
0.003
0
7mer
296-314
0.003
Not Conserved
6mer
3689-3694
0.003
Not Conserved
6mer
3333-3340
0.002
Not Conserved
7mer
3270-3284
0.002
Not Conserved
7mer
2658-2675
0.002
0
6mer
3175-3198
0.001
Not Conserved
8mer
1963-1980
0.001
Not Conserved
7mer
1856-1879
0.001
Not Conserved
8mer
1624-1639
0.001
Not Conserved
7mer
2848-2862
0.001
Not Conserved
6mer
2947-2971
0.001
Not Conserved
7mer
2545-2560
0.001
Not Conserved
8mer
1727-1744
0.001
Not Conserved
7mer
2943-2961
0.001
Not Conserved
7mer
1723-1744
0.000
Not Conserved
LINC01001
hsa-miR-940
0.984

Gene Details
Chromosome: 11
Transcript: NR_028326.1
Biotype: lincRNA
Gene id: NR_028326.1 (gene)
Gene Name: LINC01001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-337
0.015
0
7mer
4189-4204
0.006
0
8mer
3033-3048
0.005
Not Conserved
7mer
3837-3852
0.005
Not Conserved
7mer
435-450
0.005
Not Conserved
7mer
2559-2582
0.005
Not Conserved
7mer
296-314
0.005
0
6mer
4573-4589
0.004
0
8mer
1431-1450
0.003
Not Conserved
7mer
570-587
0.003
Not Conserved
6mer
4253-4268
0.003
0
7mer
2785-2802
0.002
0
6mer
4030-4037
0.002
Not Conserved
6mer
3674-3681
0.002
Not Conserved
7mer
3611-3625
0.001
Not Conserved
6mer
3516-3539
0.001
Not Conserved
7mer
2999-3016
0.001
0
7mer
2197-2220
0.001
Not Conserved
8mer
1965-1980
0.001
Not Conserved
7mer
3189-3203
0.001
Not Conserved
6mer
3288-3312
0.001
Not Conserved
8mer
2304-2326
0.001
Not Conserved
7mer
2886-2901
0.001
Not Conserved
8mer
2068-2085
0.001
Not Conserved
7mer
3284-3302
0.001
Not Conserved
7mer
2064-2085
0.000
Not Conserved
XLOC_006123
hsa-miR-940
0.984

Gene Details
Chromosome: chr7
Transcript: TCONS_00013475
Biotype: transcript isomorph
Gene id: XLOC_006123
Gene Name: XLOC_006123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-364
0.030
0
7mer
774-793
0.014
0
8mer
725-734
0.013
0
7mer
628-652
0.011
0
8mer
1938-1945
0.005
Not Conserved
6mer
1918-1934
0.003
Not Conserved
6mer
1294-1315
0.001
Not Conserved
RP4-639J15.3
hsa-miR-940
0.983

Gene Details
Chromosome: 7
Transcript: ENST00000594086
Biotype: lincRNA
Gene id: ENSG00000269446
Gene Name: RP4-639J15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-439
0.026
1
7mer
645-666
0.024
1
6mer
48-68
0.014
1
6mer
1014-1035
0.008
0
8mer
438-444
0.004
Not Conserved
XLOC_009043
hsa-miR-940
0.983

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-463
0.077
0
XLOC_006827
hsa-miR-940
0.981

Gene Details
Chromosome: chr8
Transcript: TCONS_00014496
Biotype: transcript isomorph
Gene id: XLOC_006827
Gene Name: XLOC_006827
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1881-1898
0.066
0
6mer
1145-1161
0.004
5
6mer
1044-1062
0.004
3
6mer
639-651
0.002
0
LINC01000
hsa-miR-940
0.981

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
637-652
0.006
1
8mer
4047-4057
0.005
1
7mer
989-1004
0.004
0
7mer
5207-5232
0.004
1
8mer
1777-1793
0.004
Not Conserved
7mer
3797-3814
0.004
1
7mer
8453-8474
0.004
0
7mer
2253-2267
0.003
Not Conserved
8mer
2935-2954
0.003
0
6mer
9630-9635
0.003
1
6mer
806-811
0.003
0
6mer
9251-9263
0.002
1
7mer
3934-3949
0.002
0
6mer
9403-9427
0.002
2
7mer
6210-6234
0.002
0
6mer
9280-9306
0.002
2
7mer
2024-2041
0.002
0
8mer
2500-2522
0.002
0
7mer
1201-1215
0.002
0
7mer
6396-6423
0.001
0
6mer
1145-1152
0.001
0
7mer
2606-2629
0.001
0
8mer
2741-2758
0.001
0
6mer
1287-1310
0.001
0
6mer
829-843
0.001
Not Conserved
7mer
1611-1637
0.001
Not Conserved
7mer
1810-1827
0.001
0
6mer
1514-1538
0.001
Not Conserved
7mer
1925-1940
0.001
Not Conserved
6mer
4469-4491
0.001
0
7mer
1524-1542
0.001
Not Conserved
7mer
2741-2762
0.001
0
6mer
4069-4088
0.000
1
XLOC_012981
hsa-miR-940
0.981

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2474-2488
0.044
0
7mer
565-579
0.020
0
8mer
618-632
0.009
0
6mer
968-990
0.003
0
AC079779.7
hsa-miR-940
0.981

Gene Details
Chromosome: 2
Transcript: ENST00000437798
Biotype: antisense
Gene id: ENSG00000227061
Gene Name: AC079779.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4647-4668
0.010
1
7mer
29-55
0.006
0
7mer
132-159
0.006
0
7mer
80-107
0.005
0
7mer
184-211
0.005
0
7mer
237-263
0.005
0
7mer
288-315
0.004
0
7mer
340-367
0.004
0
7mer
392-419
0.004
0
7mer
444-471
0.004
0
7mer
549-575
0.003
0
7mer
601-627
0.003
0
7mer
496-523
0.003
Not Conserved
7mer
652-679
0.003
0
7mer
704-731
0.003
0
7mer
756-783
0.003
0
7mer
912-939
0.002
0
7mer
808-835
0.002
Not Conserved
7mer
860-887
0.002
Not Conserved
XLOC_006468
hsa-miR-940
0.979

Gene Details
Chromosome: chr7
Transcript: TCONS_00012911
Biotype: transcript isomorph
Gene id: XLOC_006468
Gene Name: XLOC_006468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3101-3120
0.028
1
8mer
3176-3203
0.022
1
7mer
2609-2623
0.013
1
9mer
2801-2817
0.007
0
7mer
2572-2590
0.003
0
6mer
2437-2461
0.001
0
XLOC_011633
hsa-miR-940
0.979

Gene Details
Chromosome: chr16
Transcript: TCONS_00024320
Biotype: transcript isomorph
Gene id: XLOC_011633
Gene Name: XLOC_011633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-362
0.046
0
8mer
149-162
0.020
0
7mer
196-216
0.008
0
RP11-1149O23.3
hsa-miR-940
0.979

Gene Details
Chromosome: 8
Transcript: ENST00000500853
Biotype: antisense
Gene id: ENSG00000246582
Gene Name: RP11-1149O23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-259
0.038
Not Conserved
7mer
357-377
0.015
1
7mer
642-661
0.010
0
7mer
1057-1079
0.007
0
7mer
848-863
0.004
0
C20orf203
hsa-miR-940
0.978

Gene Details
Chromosome: 20
Transcript: ENST00000608990
Biotype: lincRNA
Gene id: ENSG00000198547
Gene Name: C20orf203
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-374
0.021
3
8mer
143-149
0.018
1
7mer
452-473
0.011
1
7mer
4454-4475
0.007
1
7mer
1117-1129
0.003
2
7mer
3881-3893
0.003
2
6mer
4613-4628
0.003
1
7mer
1290-1303
0.003
Not Conserved
6mer
1934-1942
0.002
Not Conserved
6mer
4005-4017
0.001
0
6mer
1776-1786
0.001
0
XLOC_001401
hsa-miR-940
0.978

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1313-1328
0.029
0
6mer
2199-2225
0.015
0
6mer
473-488
0.015
0
6mer
1882-1892
0.014
0
RP11-93B14.9
hsa-miR-940
0.977

Gene Details
Chromosome: 20
Transcript: ENST00000617703
Biotype: antisense
Gene id: ENSG00000277496
Gene Name: RP11-93B14.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-293
0.043
1
7mer
1260-1285
0.015
0
7mer
985-993
0.011
1
6mer
1403-1426
0.003
0
RP5-1014D13.2
hsa-miR-940
0.976

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8659-8681
0.007
Not Conserved
7mer
18217-18237
0.004
1
7mer
5355-5376
0.004
0
7mer
6318-6334
0.004
0
7mer
13528-13553
0.004
0
7mer
17367-17383
0.004
4
7mer
2891-2911
0.004
0
6mer
18785-18799
0.004
4
7mer
14881-14902
0.003
0
7mer
12997-13017
0.003
0
7mer
14438-14460
0.003
0
9mer
8548-8575
0.003
1
7mer
2411-2431
0.003
Not Conserved
7mer
4060-4080
0.003
0
7mer
3552-3577
0.003
Not Conserved
8mer
16444-16459
0.002
0
8mer
12827-12842
0.002
1
6mer
4653-4667
0.002
1
8mer
18358-18373
0.002
1
6mer
11596-11612
0.001
6
6mer
12690-12707
0.001
1
7mer
14921-14947
0.001
0
6mer
14260-14267
0.001
1
6mer
16580-16601
0.001
1
6mer
18356-18368
0.001
1
7mer
15070-15084
0.001
1
7mer
14581-14595
0.001
0
6mer
15068-15080
0.001
1
6mer
14579-14591
0.001
0
RP11-525A16.4
hsa-miR-940
0.976

Gene Details
Chromosome: 10
Transcript: ENST00000609514
Biotype: lincRNA
Gene id: ENSG00000273143
Gene Name: RP11-525A16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-86
0.056
2
7mer
272-285
0.012
0
8mer
15-39
0.003
1
XLOC_004364
hsa-miR-940
0.975

Gene Details
Chromosome: chr5
Transcript: TCONS_00010677
Biotype: transcript isomorph
Gene id: XLOC_004364
Gene Name: XLOC_004364
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-285
0.056
0
6mer
264-281
0.015
0
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