LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Gene
miRNA
Score
DIANA Links
FLJ36777
hsa-miR-940
0.996
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501888
Biotype: lincRNA
Gene id: ENSG00000245468
Gene Name: FLJ36777
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-20
0.058
1
8mer
608-615
0.014
0
8mer
1957-1971
0.009
0
8mer
1360-1375
0.009
0
8mer
1813-1824
0.007
0
6mer
1295-1307
0.004
1
XLOC_011693
hsa-miR-940
0.996
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1862-1884
0.034
0
7mer
1346-1353
0.024
0
7mer
1216-1231
0.017
0
6mer
1922-1937
0.015
0
6mer
352-373
0.006
0
6mer
664-682
0.003
Not Conserved
6mer
1064-1076
0.002
Not Conserved
LINC01224
hsa-miR-940
0.996
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2184-2204
0.037
1
7mer
1269-1288
0.023
1
6mer
647-654
0.010
1
7mer
1684-1709
0.008
0
7mer
1489-1509
0.008
0
7mer
787-801
0.007
0
7mer
1608-1625
0.004
0
6mer
1187-1196
0.003
1
XLOC_009016
hsa-miR-940
0.996
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019181
Biotype: transcript isomorph
Gene id: XLOC_009016
Gene Name: XLOC_009016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-255
0.081
1
7mer
475-498
0.019
1
AC005537.2
hsa-miR-940
0.996
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585996
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-233
0.058
1
7mer
473-484
0.031
1
6mer
358-384
0.011
1
RP11-495P10.8
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-308
0.071
0
6mer
331-344
0.015
0
6mer
617-637
0.012
0
MIR6818
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25714-25737
0.007
1
8mer
32904-32925
0.006
0
7mer
39473-39483
0.005
6
7mer
39696-39716
0.005
1
7mer
20966-20986
0.004
1
8mer
311-325
0.004
0
7mer
16669-16675
0.004
1
7mer
22345-22366
0.004
1
7mer
6575-6597
0.003
0
8mer
6453-6474
0.003
1
7mer
40161-40178
0.003
0
8mer
42744-42769
0.003
0
8mer
36734-36752
0.003
Not Conserved
7mer
21281-21293
0.003
0
7mer
45248-45266
0.003
Not Conserved
6mer
38651-38655
0.003
2
7mer
47512-47526
0.003
2
6mer
316-326
0.002
0
6mer
28087-28091
0.002
2
6mer
23721-23747
0.002
1
7mer
36318-36341
0.002
0
6mer
34088-34094
0.002
2
6mer
25102-25123
0.002
4
6mer
46454-46476
0.002
5
7mer
3029-3042
0.002
0
6mer
20203-20227
0.002
4
7mer
20199-20221
0.002
3
6mer
42553-42557
0.002
1
6mer
24652-24672
0.002
1
6mer
12920-12941
0.001
1
6mer
20034-20041
0.001
1
6mer
44657-44672
0.001
1
6mer
6259-6286
0.001
2
7mer
20834-20846
0.001
0
6mer
2564-2579
0.001
3
6mer
2657-2669
0.001
0
7mer
2653-2667
0.001
1
CTD-2017D11.1
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1343-1351
0.014
1
6mer
1100-1124
0.013
1
7mer
898-904
0.012
1
6mer
732-744
0.012
1
8mer
1129-1135
0.012
0
6mer
567-587
0.011
1
6mer
1397-1410
0.009
1
7mer
1189-1195
0.008
0
7mer
830-839
0.007
0
XLOC_008332
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
839-858
0.075
0
7mer
549-554
0.022
0
TTTY4C
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000456123
Biotype: lincRNA
Gene id: ENSG00000228296
Gene Name: TTTY4C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
840-859
0.075
0
7mer
550-555
0.022
0
TTTY4
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
488-507
0.075
0
7mer
792-797
0.022
0
XLOC_008301
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017580
Biotype: transcript isomorph
Gene id: XLOC_008301
Gene Name: XLOC_008301
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
488-507
0.075
0
7mer
792-797
0.022
0
TTTY4B
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
488-507
0.075
0
7mer
792-797
0.022
0
XLOC_008302
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017581
Biotype: transcript isomorph
Gene id: XLOC_008302
Gene Name: XLOC_008302
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
488-507
0.075
0
7mer
792-797
0.022
0
XLOC_006459
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014308
Biotype: transcript isomorph
Gene id: XLOC_006459
Gene Name: XLOC_006459
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-531
0.047
1
8mer
377-385
0.017
0
6mer
1541-1564
0.009
0
6mer
1510-1530
0.008
0
7mer
318-337
0.008
Not Conserved
7mer
1021-1034
0.008
0
LINC00999
hsa-miR-940
0.995
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024497.2
Biotype: lincRNA
Gene id: NR_024497.2 (gene)
Gene Name: LINC00999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4917-4927
0.028
1
7mer
344-364
0.016
1
7mer
4695-4712
0.011
1
7mer
4940-4958
0.008
1
8mer
3818-3837
0.005
0
8mer
2016-2038
0.005
1
6mer
1038-1049
0.004
1
7mer
1450-1465
0.003
0
7mer
1098-1113
0.003
0
6mer
1267-1272
0.002
0
8mer
2366-2376
0.002
0
6mer
1618-1625
0.002
0
7mer
1672-1688
0.002
0
7mer
2129-2145
0.001
Not Conserved
7mer
1696-1721
0.001
0
6mer
1760-1783
0.001
0
6mer
1290-1304
0.001
0
8mer
2257-2274
0.001
Not Conserved
7mer
2257-2278
0.000
Not Conserved
XLOC_006126
hsa-miR-940
0.994
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013478
Biotype: transcript isomorph
Gene id: XLOC_006126
Gene Name: XLOC_006126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
816-823
0.057
0
6mer
98-122
0.015
0
6mer
726-746
0.013
0
7mer
245-264
0.006
Not Conserved
7mer
174-193
0.003
Not Conserved
XLOC_003440
hsa-miR-940
0.994
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3102-3117
0.024
1
7mer
2970-2982
0.020
1
7mer
2696-2715
0.012
1
6mer
2131-2143
0.010
2
6mer
3144-3166
0.009
1
7mer
518-541
0.006
0
7mer
1318-1334
0.006
1
7mer
918-945
0.006
0
CTD-2008P7.1
hsa-miR-940
0.993
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000564762
Biotype: lincRNA
Gene id: ENSG00000260777
Gene Name: CTD-2008P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-201
0.039
1
7mer
701-706
0.029
1
7mer
353-377
0.024
1
XLOC_013708
hsa-miR-940
0.993
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
33-41
0.055
0
7mer
1251-1276
0.018
0
7mer
1290-1304
0.018
0
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