LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Gene
miRNA
Score
DIANA Links
RP11-34P13.13
hsa-miR-940
0.999
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4734-4755
0.035
1
7mer
4599-4613
0.027
1
7mer
3999-4013
0.024
1
6mer
4603-4629
0.010
1
8mer
1918-1933
0.010
0
8mer
2364-2379
0.008
0
7mer
2501-2521
0.006
0
6mer
1718-1730
0.006
1
LINC00293
hsa-miR-940
0.999
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1418-1433
0.103
1
7mer
652-677
0.017
1
6mer
1093-1113
0.006
0
XLOC_010133
hsa-miR-940
0.999
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020848
Biotype: transcript isomorph
Gene id: XLOC_010133
Gene Name: XLOC_010133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-119
0.095
0
7mer
154-159
0.023
0
RP11-15H20.6
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397094
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1904-1925
0.051
1
7mer
654-675
0.023
1
7mer
1452-1474
0.023
1
7mer
809-828
0.009
0
7mer
1378-1395
0.005
0
8mer
519-534
0.004
Not Conserved
LL22NC03-86G7.1
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36703-36715
0.006
1
7mer
10937-10957
0.006
1
9mer
13578-13600
0.005
0
8mer
15374-15390
0.005
1
8mer
34469-34492
0.005
1
9mer
31005-31017
0.004
1
8mer
28220-28226
0.004
1
7mer
13934-13948
0.004
1
8mer
15829-15853
0.004
0
7mer
25449-25461
0.004
1
7mer
2584-2605
0.003
1
7mer
11670-11690
0.003
1
9mer
30803-30810
0.003
0
7mer
26206-26226
0.003
1
7mer
20854-20862
0.003
1
6mer
351-377
0.003
1
7mer
14324-14350
0.003
1
7mer
2690-2712
0.003
2
8mer
994-1019
0.003
1
7mer
18293-18313
0.003
1
7mer
14461-14482
0.002
1
7mer
32632-32653
0.002
1
7mer
9263-9275
0.002
0
7mer
2230-2241
0.002
1
7mer
20994-21007
0.002
2
7mer
9970-9982
0.002
2
9mer
17409-17435
0.002
1
6mer
35648-35655
0.002
0
6mer
33283-33308
0.002
0
6mer
12663-12678
0.002
1
8mer
20683-20706
0.002
1
6mer
23786-23802
0.002
1
7mer
22469-22492
0.001
1
7mer
11802-11816
0.001
1
6mer
3861-3882
0.001
2
6mer
16670-16694
0.001
2
7mer
7411-7416
0.001
1
6mer
3325-3348
0.001
1
6mer
17854-17876
0.001
0
6mer
14077-14082
0.001
1
6mer
26961-26980
0.001
1
6mer
12074-12095
0.001
0
6mer
7269-7289
0.001
1
8mer
7409-7421
0.001
0
6mer
9423-9440
0.001
0
6mer
35652-35662
0.001
1
7mer
14081-14086
0.001
1
7mer
18293-18317
0.001
1
6mer
8786-8810
0.001
1
6mer
26662-26677
0.001
1
6mer
24271-24295
0.001
1
6mer
24567-24590
0.001
0
7mer
24283-24299
0.000
1
6mer
9264-9291
0.000
0
6mer
15394-15408
0.000
0
LINC00293
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1429-1444
0.091
1
7mer
663-688
0.017
1
6mer
1104-1124
0.006
0
RP3-323A16.1
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-321
0.014
1
8mer
25619-25625
0.009
1
7mer
10683-10708
0.008
1
7mer
14479-14484
0.005
0
7mer
37071-37083
0.004
9
7mer
1243-1270
0.004
1
6mer
53554-53576
0.004
1
7mer
40374-40395
0.004
0
7mer
36967-36973
0.003
2
7mer
21619-21639
0.003
1
7mer
50819-50839
0.003
0
7mer
43547-43568
0.003
0
7mer
3746-3760
0.003
0
7mer
33595-33616
0.003
0
6mer
526-535
0.003
1
7mer
6679-6686
0.003
0
6mer
37161-37185
0.002
7
6mer
42844-42859
0.002
3
6mer
13550-13562
0.002
4
6mer
49121-49146
0.002
1
6mer
35715-35727
0.002
4
6mer
31253-31272
0.002
0
6mer
13908-13930
0.002
1
6mer
51030-51047
0.001
1
6mer
23947-23970
0.001
1
6mer
43256-43282
0.001
1
6mer
24278-24282
0.001
0
7mer
22056-22069
0.001
Not Conserved
6mer
51317-51339
0.001
1
7mer
50472-50490
0.001
0
6mer
45723-45747
0.001
1
6mer
942-966
0.001
0
6mer
50437-50443
0.001
1
7mer
5239-5256
0.001
0
6mer
51458-51469
0.001
1
7mer
21901-21909
0.001
Not Conserved
7mer
33916-33929
0.001
0
6mer
11167-11194
0.001
0
6mer
31540-31555
0.001
1
7mer
1353-1366
0.001
Not Conserved
6mer
17006-17014
0.001
1
6mer
42925-42948
0.001
1
6mer
17187-17209
0.001
1
6mer
5391-5408
0.001
0
6mer
52338-52355
0.001
1
7mer
5239-5260
0.001
0
CTD-2017D11.1
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1666-1674
0.018
1
8mer
1452-1458
0.016
0
6mer
1423-1447
0.015
1
7mer
1221-1227
0.015
1
6mer
1720-1733
0.012
1
6mer
1055-1067
0.011
1
7mer
1512-1518
0.010
0
6mer
890-910
0.009
1
7mer
1153-1162
0.007
0
RP11-473M20.7
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573130
Biotype: antisense
Gene id: ENSG00000261971
Gene Name: RP11-473M20.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3652-3658
0.011
0
7mer
3861-3867
0.010
1
8mer
3552-3558
0.009
1
8mer
3452-3458
0.007
1
7mer
934-955
0.007
1
8mer
3420-3426
0.007
1
8mer
3520-3526
0.006
0
8mer
3384-3390
0.006
1
8mer
3284-3290
0.005
0
8mer
3352-3358
0.005
0
8mer
3180-3186
0.005
0
8mer
2141-2156
0.005
0
8mer
3316-3322
0.004
0
7mer
1398-1420
0.004
1
8mer
3144-3150
0.004
0
8mer
1619-1625
0.004
1
8mer
3036-3042
0.003
Not Conserved
8mer
1390-1396
0.003
1
6mer
256-275
0.003
1
7mer
3012-3017
0.002
0
7mer
2043-2069
0.001
Not Conserved
LINC01005
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441691
Biotype: antisense
Gene id: ENSG00000228564
Gene Name: LINC01005
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-353
0.062
1
8mer
409-436
0.050
1
XLOC_009222
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6110-6124
0.038
0
7mer
4474-4499
0.028
0
7mer
2701-2725
0.016
0
6mer
5461-5474
0.013
0
8mer
4231-4253
0.009
Not Conserved
6mer
5216-5236
0.008
0
RP11-206L10.3
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4734-4755
0.035
0
7mer
4599-4613
0.027
0
7mer
3999-4013
0.023
0
6mer
4603-4629
0.010
0
6mer
1718-1730
0.006
0
8mer
2361-2376
0.003
Not Conserved
7mer
2498-2518
0.003
Not Conserved
8mer
1918-1934
0.003
Not Conserved
RP1-309I22.2
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28411-28429
0.022
2
8mer
16489-16504
0.008
Not Conserved
7mer
10494-10519
0.007
5
8mer
4138-4144
0.006
1
7mer
23938-23960
0.004
3
8mer
22492-22498
0.004
6
7mer
8585-8606
0.003
0
7mer
13522-13532
0.003
0
9mer
11241-11256
0.003
1
8mer
8259-8274
0.003
1
7mer
25681-25695
0.003
0
7mer
18824-18839
0.003
0
7mer
7029-7034
0.003
3
7mer
14522-14531
0.003
1
9mer
26510-26526
0.002
1
8mer
23424-23447
0.002
2
6mer
22436-22458
0.002
1
6mer
9636-9646
0.002
1
6mer
25559-25575
0.002
6
6mer
23399-23420
0.002
4
6mer
10708-10712
0.002
3
6mer
14319-14345
0.002
4
6mer
15072-15080
0.002
0
6mer
3885-3905
0.001
0
6mer
21615-21639
0.001
4
8mer
23493-23499
0.001
2
6mer
7729-7744
0.001
3
6mer
6773-6794
0.001
2
6mer
26716-26738
0.001
1
7mer
14596-14622
0.001
1
7mer
21910-21929
0.001
Not Conserved
6mer
13725-13748
0.001
2
6mer
1414-1432
0.001
0
6mer
10350-10365
0.001
1
6mer
1715-1737
0.001
1
7mer
24016-24039
0.001
0
6mer
12949-12960
0.001
0
8mer
24028-24044
0.001
0
6mer
5333-5356
0.001
0
6mer
21652-21659
0.001
4
6mer
7730-7753
0.000
3
7mer
12998-13024
0.000
0
LOC100190986
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-573
0.046
0
7mer
2341-2362
0.037
0
7mer
695-715
0.027
0
LINC01237
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457686
Biotype: lincRNA
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-556
0.033
1
8mer
545-561
0.023
0
6mer
335-348
0.021
1
6mer
441-450
0.020
1
6mer
460-474
0.013
1
LINC01237
hsa-miR-940
0.998
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430555
Biotype: lincRNA
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
687-701
0.028
1
8mer
690-706
0.022
0
6mer
480-493
0.019
1
6mer
586-595
0.017
1
6mer
605-619
0.014
1
7mer
260-281
0.010
Not Conserved
AP001476.4
hsa-miR-940
0.997
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000429512
Biotype: lincRNA
Gene id: ENSG00000228235
Gene Name: AP001476.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-387
0.027
0
8mer
282-289
0.027
0
8mer
347-354
0.026
0
8mer
314-321
0.025
0
CTA-212A2.3
hsa-miR-940
0.997
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-632
0.018
0
8mer
843-854
0.012
0
7mer
14129-14144
0.009
0
7mer
473-494
0.008
0
7mer
5876-5896
0.007
1
9mer
13935-13942
0.007
0
7mer
326-341
0.006
1
7mer
13248-13262
0.005
0
7mer
9739-9760
0.005
0
7mer
8646-8659
0.005
1
7mer
11479-11500
0.004
1
8mer
4935-4957
0.004
1
7mer
12018-12039
0.004
0
6mer
7557-7564
0.002
1
6mer
13059-13075
0.002
0
6mer
10551-10572
0.002
0
6mer
4547-4554
0.002
2
6mer
11909-11920
0.001
0
8mer
11620-11635
0.001
0
6mer
3183-3202
0.001
Not Conserved
6mer
900-907
0.001
0
RP4-669L17.10
hsa-miR-940
0.996
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4034-4044
0.016
0
7mer
3784-3801
0.010
1
7mer
3921-3936
0.008
0
7mer
763-778
0.007
0
6mer
26-42
0.006
1
8mer
2921-2940
0.006
0
7mer
411-426
0.006
0
6mer
347-362
0.005
1
7mer
2033-2056
0.005
Not Conserved
7mer
4057-4075
0.005
0
6mer
578-585
0.004
0
8mer
1567-1582
0.004
Not Conserved
7mer
990-1004
0.003
0
6mer
934-941
0.003
0
7mer
1813-1830
0.002
0
6mer
1076-1099
0.002
0
8mer
2635-2650
0.002
0
8mer
2289-2311
0.002
0
7mer
1599-1616
0.001
0
7mer
2395-2418
0.001
Not Conserved
7mer
1412-1426
0.001
Not Conserved
6mer
1303-1327
0.001
Not Conserved
7mer
1714-1729
0.001
Not Conserved
8mer
2530-2547
0.001
Not Conserved
7mer
1313-1331
0.001
Not Conserved
7mer
2530-2551
0.000
Not Conserved
TTN-AS1
hsa-miR-940
0.996
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4404-4428
0.069
7
7mer
195-207
0.014
1
6mer
4220-4244
0.007
9
6mer
4131-4145
0.003
1
6mer
2648-2672
0.003
7
6mer
3057-3071
0.002
8
6mer
2248-2267
0.002
7
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