LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Gene
miRNA
Score
DIANA Links
RP11-1348G14.4
hsa-miR-940
0.934
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000507031
Biotype: lincRNA
Gene id: ENSG00000251417
Gene Name: RP11-1348G14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-363
0.009
Not Conserved
7mer
1547-1567
0.009
0
7mer
28-48
0.007
0
7mer
1188-1209
0.007
0
8mer
518-524
0.006
Not Conserved
7mer
509-516
0.004
Not Conserved
7mer
888-908
0.004
Not Conserved
7mer
1331-1344
0.002
0
7mer
1029-1043
0.002
0
6mer
1330-1340
0.002
0
6mer
1029-1039
0.001
0
XLOC_010142
hsa-miR-940
0.934
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020859
Biotype: transcript isomorph
Gene id: XLOC_010142
Gene Name: XLOC_010142
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2394-2401
0.027
2
7mer
2349-2365
0.013
0
7mer
191-197
0.010
Not Conserved
6mer
42-50
0.004
0
RP11-323H21.3
hsa-miR-940
0.934
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444708
Biotype: lincRNA
Gene id: ENSG00000236687
Gene Name: RP11-323H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-533
0.035
3
7mer
411-425
0.010
1
7mer
278-292
0.009
1
LINC01002
hsa-miR-940
0.933
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620229
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
853-874
0.034
1
8mer
444-466
0.013
Not Conserved
6mer
879-898
0.006
0
CTD-2561J22.5
hsa-miR-940
0.933
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596705
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-137
0.038
0
7mer
102-108
0.016
0
RP11-383J24.6
hsa-miR-940
0.932
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607837
Biotype: lincRNA
Gene id: ENSG00000271975
Gene Name: RP11-383J24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
664-685
0.015
1
7mer
1749-1773
0.013
1
6mer
2060-2087
0.009
1
7mer
1659-1676
0.006
0
6mer
1585-1602
0.005
1
6mer
1564-1581
0.004
1
7mer
529-543
0.002
Not Conserved
XLOC_002749
hsa-miR-940
0.932
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006148
Biotype: transcript isomorph
Gene id: XLOC_002749
Gene Name: XLOC_002749
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2893-2907
0.010
0
8mer
1494-1500
0.009
4
7mer
2231-2252
0.009
0
7mer
2935-2956
0.008
Not Conserved
8mer
895-913
0.007
1
7mer
928-934
0.005
1
6mer
2425-2439
0.003
0
6mer
1750-1767
0.002
2
RP4-539M6.22
hsa-miR-940
0.932
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000366413
Biotype: pseudogene
Gene id: ENSG00000273428
Gene Name: RP4-539M6.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-165
0.016
1
7mer
279-291
0.010
0
7mer
422-436
0.010
0
7mer
319-333
0.009
0
6mer
192-207
0.004
0
7mer
214-228
0.004
0
LINC01482
hsa-miR-940
0.932
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585484
Biotype: lincRNA
Gene id: ENSG00000267659
Gene Name: LINC01482
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2405-2421
0.027
0
7mer
388-406
0.021
1
7mer
2066-2087
0.004
0
6mer
2054-2061
0.002
0
RP11-309H21.3
hsa-miR-940
0.930
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-104
0.022
0
7mer
686-701
0.017
0
6mer
1021-1038
0.008
0
6mer
1775-1781
0.006
0
CTC-559E9.6
hsa-miR-940
0.930
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589657
Biotype: antisense
Gene id: ENSG00000267419
Gene Name: CTC-559E9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
639-659
0.039
1
7mer
229-241
0.014
0
RP4-539M6.22
hsa-miR-940
0.929
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607893
Biotype: lincRNA
Gene id: ENSG00000273428
Gene Name: RP4-539M6.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-165
0.016
1
7mer
279-291
0.011
0
7mer
319-333
0.009
0
7mer
424-438
0.008
0
6mer
192-207
0.004
0
7mer
214-228
0.004
0
XLOC_006122
hsa-miR-940
0.929
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
445-471
0.021
1
8mer
330-336
0.021
0
7mer
100-105
0.011
0
LINC00839
hsa-miR-940
0.929
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-72
0.022
1
7mer
1780-1791
0.014
0
6mer
2023-2037
0.006
0
6mer
126-149
0.005
0
7mer
977-987
0.005
Not Conserved
LINC00506
hsa-miR-940
0.928
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4075-4090
0.019
1
9mer
1656-1672
0.009
0
7mer
1079-1086
0.008
0
7mer
3395-3411
0.007
0
8mer
2378-2393
0.004
0
6mer
3170-3185
0.004
0
6mer
2662-2677
0.002
0
LOC100128885
hsa-miR-940
0.926
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
202-222
0.013
1
6mer
137-162
0.011
1
6mer
4209-4234
0.006
0
7mer
3255-3279
0.005
0
7mer
1239-1250
0.005
0
6mer
976-1002
0.003
0
6mer
756-777
0.003
0
6mer
3035-3054
0.002
0
6mer
3626-3644
0.002
0
6mer
1301-1320
0.001
0
LINC01224
hsa-miR-940
0.925
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593573
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-627
0.029
1
7mer
523-541
0.023
1
RP11-301G19.1
hsa-miR-940
0.925
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412872
Biotype: lincRNA
Gene id: ENSG00000227706
Gene Name: RP11-301G19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-443
0.052
0
FLJ42627
hsa-miR-940
0.925
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024492.1
Biotype: lincRNA
Gene id: NR_024492.1 (gene)
Gene Name: FLJ42627
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5091-5103
0.008
0
7mer
6886-6892
0.008
3
7mer
6965-6976
0.008
0
7mer
6821-6844
0.007
Not Conserved
6mer
7066-7081
0.006
0
7mer
6848-6863
0.006
1
7mer
3123-3142
0.002
0
8mer
3383-3396
0.002
5
7mer
3529-3554
0.001
0
6mer
5592-5602
0.001
1
7mer
5592-5606
0.001
1
6mer
3742-3749
0.001
0
LEMD1-AS1
hsa-miR-940
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447832
Biotype: antisense
Gene id: ENSG00000226235
Gene Name: LEMD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-286
0.037
2
7mer
632-653
0.008
1
7mer
1739-1759
0.004
0
6mer
544-551
0.003
0
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