LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008328
hsa-miR-93-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
842-862
0.039
0
6mer
1238-1262
0.014
0
RP11-634B7.4
hsa-miR-93-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000582218
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
452-479
0.028
0
6mer
89-108
0.016
1
6mer
21-45
0.009
0
RP11-887P2.5
hsa-miR-93-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-72
0.032
2
7mer
1263-1289
0.008
2
7mer
1446-1467
0.005
1
7mer
579-603
0.005
1
6mer
1021-1041
0.003
0
AC096772.6
hsa-miR-93-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000343987
Biotype: lincRNA
Gene id: ENSG00000244567
Gene Name: AC096772.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1057-1078
0.026
0
7mer
267-287
0.017
1
7mer
1012-1032
0.011
0
CTA-796E4.5
hsa-miR-93-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31169-31188
0.009
0
6mer
132-143
0.006
1
7mer
16024-16044
0.005
2
7mer
3282-3305
0.004
1
9mer
9297-9321
0.003
1
6mer
1985-2008
0.003
3
7mer
7544-7570
0.003
0
6mer
24119-24143
0.003
0
7mer
3481-3496
0.002
1
7mer
19761-19787
0.002
1
6mer
1375-1392
0.002
0
6mer
30543-30553
0.002
0
6mer
12805-12832
0.001
2
7mer
8796-8813
0.001
2
6mer
22036-22058
0.001
0
6mer
27130-27150
0.001
Not Conserved
6mer
29354-29372
0.001
Not Conserved
7mer
8650-8674
0.001
1
6mer
8183-8201
0.001
Not Conserved
6mer
8542-8568
0.001
0
FIRRE
hsa-miR-93-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000427391
Biotype: lincRNA
Gene id: ENSG00000213468
Gene Name: FIRRE
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-49
0.032
1
8mer
2729-2748
0.017
1
8mer
1362-1382
0.004
1
MIR6080
hsa-miR-93-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578492
Biotype: processed_transcript
Gene id: ENSG00000215769
Gene Name: MIR6080
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-164
0.049
8
6mer
295-315
0.004
2
RP11-421L21.3
hsa-miR-93-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416329
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
611-636
0.053
3
LL22NC03-86G7.1
hsa-miR-93-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32504-32527
0.008
1
9mer
37483-37506
0.006
0
7mer
474-499
0.004
0
7mer
32893-32918
0.004
4
7mer
15812-15838
0.003
1
9mer
29876-29900
0.003
1
7mer
8573-8594
0.003
Not Conserved
9mer
24953-24971
0.003
1
6mer
36083-36100
0.003
1
7mer
10558-10583
0.002
1
7mer
4353-4379
0.002
0
7mer
34294-34319
0.002
1
6mer
29275-29301
0.002
1
7mer
3819-3845
0.001
Not Conserved
6mer
7921-7935
0.001
1
6mer
36460-36481
0.001
1
6mer
33324-33343
0.001
0
6mer
22119-22139
0.001
1
6mer
12171-12188
0.001
1
6mer
35149-35171
0.001
1
AC008268.1
hsa-miR-93-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425887
Biotype: lincRNA
Gene id: ENSG00000235584
Gene Name: AC008268.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1057-1073
0.031
2
7mer
631-655
0.011
1
6mer
960-975
0.007
2
6mer
764-785
0.004
2
BCYRN1
hsa-miR-93-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-322
0.017
1
8mer
928-947
0.008
1
8mer
12732-12751
0.007
1
6mer
322-343
0.005
0
8mer
6252-6271
0.004
1
9mer
11237-11261
0.003
1
9mer
2691-2715
0.003
0
6mer
5722-5739
0.002
1
6mer
8974-8987
0.002
1
7mer
7916-7940
0.002
0
ZNF561-AS1
hsa-miR-93-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585797
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-130
0.052
1
XLOC_005160
hsa-miR-93-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011687
Biotype: transcript isomorph
Gene id: XLOC_005160
Gene Name: XLOC_005160
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-76
0.045
1
6mer
5488-5510
0.006
1
6mer
3468-3486
0.002
Not Conserved
LINC00836
hsa-miR-93-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108069.1
Biotype: lincRNA
Gene id: NR_108069.1 (gene)
Gene Name: LINC00836
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1058-1073
0.046
0
6mer
1078-1097
0.006
0
RP11-909M7.3
hsa-miR-93-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110178.1
Biotype: lincRNA
Gene id: NR_110178.1 (gene)
Gene Name: RP11-909M7.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-900
0.031
1
7mer
712-729
0.021
0
AC003973.4
hsa-miR-93-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-290
0.052
0
PROX1-AS1
hsa-miR-93-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-638
0.031
1
8mer
1948-1967
0.011
1
7mer
4303-4325
0.005
1
6mer
680-692
0.003
1
6mer
3677-3696
0.001
0
6mer
1918-1941
0.001
2
CTA-228A9.4
hsa-miR-93-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17029-17046
0.013
1
8mer
4456-4477
0.010
1
9mer
10030-10050
0.004
1
6mer
16348-16363
0.003
3
6mer
1202-1222
0.003
2
9mer
6107-6131
0.003
1
9mer
1607-1631
0.003
1
9mer
4077-4104
0.003
0
9mer
10711-10735
0.003
1
7mer
19465-19485
0.002
0
7mer
5573-5592
0.002
1
6mer
18131-18150
0.001
1
6mer
6603-6614
0.001
1
6mer
11170-11180
0.001
0
8mer
14148-14172
0.001
Not Conserved
6mer
18425-18446
0.001
1
ZNF561-AS1
hsa-miR-93-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586614
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-130
0.052
1
CTB-89H12.4
hsa-miR-93-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
560-585
0.027
10
6mer
535-557
0.009
10
6mer
143-156
0.008
6
9mer
6992-7016
0.006
1
6mer
7304-7323
0.002
0
7mer
3779-3803
0.001
0
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