LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
RP11-809F4.3
hsa-miR-93-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
401-424
0.079
1
6mer
872-898
0.010
1
LINC01204
hsa-miR-93-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000609127
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2238-2258
0.047
3
8mer
1931-1949
0.028
0
7mer
2330-2343
0.007
4
6mer
1830-1855
0.004
2
6mer
2356-2382
0.003
0
RP13-991F5.2
hsa-miR-93-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582249
Biotype: antisense
Gene id: ENSG00000266445
Gene Name: RP13-991F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-127
0.053
0
7mer
688-712
0.019
0
7mer
395-421
0.016
0
CTD-2015H6.3
hsa-miR-93-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508000
Biotype: antisense
Gene id: ENSG00000249042
Gene Name: CTD-2015H6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-492
0.056
2
9mer
837-857
0.012
1
7mer
339-360
0.011
1
6mer
92-110
0.009
1
XLOC_007078
hsa-miR-93-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014998
Biotype: transcript isomorph
Gene id: XLOC_007078
Gene Name: XLOC_007078
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-562
0.047
1
7mer
33-60
0.025
1
7mer
322-344
0.014
0
XLOC_004823
hsa-miR-93-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010335
Biotype: transcript isomorph
Gene id: XLOC_004823
Gene Name: XLOC_004823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-780
0.057
2
8mer
580-598
0.030
1
RP11-263K4.3
hsa-miR-93-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548575
Biotype: lincRNA
Gene id: ENSG00000257431
Gene Name: RP11-263K4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-550
0.045
1
8mer
710-729
0.019
1
6mer
166-175
0.009
5
6mer
2467-2488
0.006
3
6mer
2874-2897
0.004
3
6mer
2767-2786
0.003
0
XLOC_012755
hsa-miR-93-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026408
Biotype: transcript isomorph
Gene id: XLOC_012755
Gene Name: XLOC_012755
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
35-55
0.068
0
6mer
284-308
0.017
0
CTA-221G9.11
hsa-miR-93-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
848-872
0.062
0
7mer
154-174
0.023
0
RP3-323A16.1
hsa-miR-93-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53939-53959
0.006
1
9mer
38888-38907
0.004
1
9mer
10831-10855
0.004
1
9mer
28235-28259
0.004
1
9mer
36600-36619
0.004
1
8mer
44778-44797
0.004
0
7mer
10104-10119
0.004
0
8mer
19372-19388
0.003
Not Conserved
6mer
20373-20398
0.003
3
7mer
40191-40213
0.003
1
7mer
40257-40277
0.003
1
9mer
3006-3024
0.003
1
6mer
14829-14845
0.003
2
7mer
42744-42763
0.003
1
6mer
25695-25715
0.002
1
6mer
53560-53586
0.002
0
7mer
47826-47849
0.002
0
7mer
1289-1310
0.002
Not Conserved
6mer
18913-18936
0.002
1
7mer
11782-11801
0.002
1
6mer
50512-50532
0.002
1
6mer
9820-9838
0.002
1
6mer
45992-46008
0.002
1
6mer
39886-39904
0.002
1
6mer
2026-2044
0.002
1
6mer
27072-27086
0.001
1
7mer
35236-35256
0.001
0
6mer
32858-32879
0.001
0
6mer
5848-5868
0.001
0
9mer
47950-47970
0.001
0
6mer
20161-20182
0.001
Not Conserved
6mer
47094-47110
0.001
1
7mer
11840-11862
0.001
1
6mer
40438-40460
0.001
1
6mer
19360-19376
0.001
Not Conserved
7mer
17537-17561
0.001
Not Conserved
XLOC_000199
hsa-miR-93-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1979-2003
0.059
1
6mer
950-976
0.014
1
6mer
598-624
0.010
1
HAND2-AS1
hsa-miR-93-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2392-2416
0.062
7
6mer
2118-2137
0.009
6
6mer
2197-2216
0.005
4
6mer
2380-2395
0.005
Not Conserved
6mer
245-262
0.003
1
RP11-1151B14.1
hsa-miR-93-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622635
Biotype: lincRNA
Gene id: ENSG00000276403
Gene Name: RP11-1151B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1234-1259
0.050
1
8mer
607-633
0.025
2
7mer
471-482
0.005
1
MIR6818
hsa-miR-93-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27872-27895
0.006
0
7mer
13653-13679
0.005
Not Conserved
9mer
5130-5154
0.005
1
7mer
19534-19559
0.005
0
6mer
9603-9616
0.004
13
8mer
32675-32694
0.004
1
6mer
15619-15638
0.003
5
9mer
18048-18067
0.003
1
9mer
11895-11915
0.003
1
9mer
4948-4972
0.003
1
9mer
10538-10558
0.003
0
6mer
5772-5788
0.003
3
6mer
2529-2550
0.003
4
6mer
33713-33733
0.003
5
6mer
24396-24417
0.002
3
6mer
23994-24013
0.002
5
6mer
15991-16011
0.002
1
6mer
15071-15087
0.002
1
6mer
42324-42343
0.002
1
6mer
18422-18447
0.002
1
7mer
4492-4516
0.002
1
6mer
16605-16620
0.002
0
6mer
6056-6081
0.002
0
6mer
7473-7492
0.002
0
6mer
9551-9570
0.001
8
7mer
46477-46493
0.001
0
6mer
20644-20670
0.001
0
6mer
34118-34136
0.001
0
6mer
20094-20114
0.001
2
6mer
46600-46618
0.001
1
6mer
32428-32453
0.001
0
6mer
47494-47516
0.001
2
RP11-374M1.2
hsa-miR-93-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-176
0.080
1
AC006548.28
hsa-miR-93-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2339-2357
0.007
0
8mer
2177-2199
0.006
1
6mer
326-346
0.006
1
8mer
59328-59342
0.006
1
9mer
63298-63320
0.005
1
8mer
71556-71577
0.004
Not Conserved
6mer
112-129
0.004
1
9mer
81628-81648
0.003
1
9mer
66882-66906
0.003
Not Conserved
8mer
41577-41600
0.003
0
6mer
28257-28283
0.002
0
7mer
24819-24845
0.002
0
6mer
41050-41069
0.002
1
7mer
51927-51948
0.002
Not Conserved
6mer
73712-73738
0.002
1
6mer
16543-16569
0.002
1
6mer
55725-55744
0.002
0
6mer
67658-67683
0.002
0
6mer
72927-72950
0.002
0
6mer
16952-16965
0.001
0
6mer
59469-59493
0.001
1
6mer
68803-68815
0.001
0
6mer
36097-36116
0.001
2
6mer
55343-55358
0.001
0
7mer
75137-75162
0.001
0
7mer
36841-36868
0.001
1
6mer
51565-51589
0.001
Not Conserved
6mer
23289-23307
0.001
1
6mer
15921-15944
0.001
1
6mer
38121-38140
0.001
1
6mer
12105-12125
0.001
1
6mer
35981-36007
0.001
1
XLOC_007765
hsa-miR-93-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016396
Biotype: transcript isomorph
Gene id: XLOC_007765
Gene Name: XLOC_007765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-197
0.064
1
6mer
322-340
0.016
1
HAND2-AS1
hsa-miR-93-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2389-2413
0.056
7
6mer
2115-2134
0.009
6
6mer
2194-2213
0.005
4
6mer
2377-2392
0.005
Not Conserved
6mer
242-259
0.003
1
CTC-265F19.1
hsa-miR-93-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587894
Biotype: sense_intronic
Gene id: ENSG00000267749
Gene Name: CTC-265F19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
917-941
0.020
0
9mer
88-108
0.018
0
6mer
1780-1807
0.014
1
6mer
1462-1481
0.010
1
6mer
1335-1362
0.008
1
6mer
1716-1735
0.005
0
6mer
1589-1608
0.004
0
VCAN-AS1
hsa-miR-93-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513899
Biotype: antisense
Gene id: ENSG00000249835
Gene Name: VCAN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
313-340
0.077
7
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