LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
CTD-2587M2.1
hsa-miR-92a-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512693
Biotype: lincRNA
Gene id: ENSG00000249476
Gene Name: CTD-2587M2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4623-4647
0.043
1
8mer+wobble
1521-1536
0.002
1
XLOC_000701
hsa-miR-92a-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001387
Biotype: transcript isomorph
Gene id: XLOC_000701
Gene Name: XLOC_000701
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-32
0.045
1
RP11-375N15.2
hsa-miR-92a-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607598
Biotype: antisense
Gene id: ENSG00000272267
Gene Name: RP11-375N15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
40-52
0.045
0
CTA-342B11.3
hsa-miR-92a-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13050-13065
0.016
1
7mer
18979-18996
0.005
1
7mer
11609-11631
0.004
0
8mer+wobble
174-189
0.003
0
7mer
12151-12169
0.003
0
8mer+wobble
5817-5832
0.003
1
6mer
17743-17757
0.002
0
8mer+wobble
5643-5658
0.002
1
8mer+wobble
20504-20519
0.002
0
8mer+wobble
4624-4639
0.001
0
8mer+wobble
9746-9761
0.001
0
6mer
1355-1381
0.001
0
8mer+wobble
21247-21262
0.001
Not Conserved
CTD-3099C6.9
hsa-miR-92a-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598322
Biotype: sense_intronic
Gene id: ENSG00000269825
Gene Name: CTD-3099C6.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2364-2389
0.021
1
8mer
2448-2462
0.021
0
7mer
1207-1222
0.002
0
XLOC_003651
hsa-miR-92a-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007401
Biotype: transcript isomorph
Gene id: XLOC_003651
Gene Name: XLOC_003651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
431-446
0.039
0
6mer
1156-1182
0.005
0
AC093375.1
hsa-miR-92a-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428651
Biotype: lincRNA
Gene id: ENSG00000226383
Gene Name: AC093375.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-445
0.044
1
LINC01279
hsa-miR-92a-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610103
Biotype: lincRNA
Gene id: ENSG00000272761
Gene Name: LINC01279
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4839-4861
0.036
1
7mer
1679-1697
0.005
1
6mer
954-966
0.002
0
RP5-1014D13.2
hsa-miR-92a-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
18164-18180
0.014
Not Conserved
7mer
196-218
0.009
0
7mer
7464-7481
0.004
0
8mer
5303-5319
0.003
0
8mer
14388-14403
0.002
1
6mer
9449-9467
0.002
1
8mer+wobble
4300-4315
0.002
1
7mer
2839-2861
0.002
Not Conserved
8mer+wobble
8813-8828
0.002
0
8mer+wobble
14830-14845
0.001
0
6mer
3597-3606
0.001
Not Conserved
7mer
14830-14852
0.001
0
8mer+wobble
3695-3710
0.001
0
BHLHE40-AS1
hsa-miR-92a-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000620618
Biotype: antisense
Gene id: ENSG00000235831
Gene Name: BHLHE40-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-75
0.033
0
7mer
1665-1683
0.005
1
6mer
1833-1849
0.004
3
6mer
1377-1402
0.002
1
RP1-79C4.1
hsa-miR-92a-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413005
Biotype: lincRNA
Gene id: ENSG00000235303
Gene Name: RP1-79C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1659-1678
0.038
1
6mer
1819-1832
0.006
2
RP11-73M14.1
hsa-miR-92a-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536786
Biotype: lincRNA
Gene id: ENSG00000256714
Gene Name: RP11-73M14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-72
0.044
0
LOC283045
hsa-miR-92a-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_104162.1
Biotype: antisense
Gene id: NR_104162.1 (gene)
Gene Name: LOC283045
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1907-1929
0.037
1
6mer
1339-1343
0.003
1
6mer
2173-2198
0.003
1
XLOC_011699
hsa-miR-92a-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024376
Biotype: transcript isomorph
Gene id: XLOC_011699
Gene Name: XLOC_011699
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-62
0.032
0
6mer
338-363
0.011
0
RP11-1020A11.2
hsa-miR-92a-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602436
Biotype: antisense
Gene id: ENSG00000269982
Gene Name: RP11-1020A11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
122-144
0.013
Not Conserved
8mer
346-361
0.011
1
7mer
3349-3360
0.008
2
7mer
2246-2269
0.006
1
8mer+wobble
2989-3004
0.002
0
6mer
2739-2759
0.002
1
8mer+wobble
1451-1466
0.001
1
RP11-122L4.1
hsa-miR-92a-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518465
Biotype: lincRNA
Gene id: ENSG00000254067
Gene Name: RP11-122L4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-180
0.038
1
6mer
113-137
0.005
1
RP11-79C6.3
hsa-miR-92a-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503269
Biotype: antisense
Gene id: ENSG00000249748
Gene Name: RP11-79C6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-252
0.043
0
XIST
hsa-miR-92a-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15232-15245
0.018
1
7mer
10332-10358
0.007
1
7mer
13025-13041
0.004
0
6mer
2408-2428
0.003
4
6mer
9778-9799
0.003
1
6mer
14801-14818
0.002
1
6mer
10117-10139
0.002
4
6mer
4820-4838
0.002
0
6mer
14705-14731
0.001
1
AP001627.1
hsa-miR-92a-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000437426
Biotype: antisense
Gene id: ENSG00000225731
Gene Name: AP001627.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1611-1636
0.042
0
KB-1572G7.3
hsa-miR-92a-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000390329
Biotype: processed_transcript
Gene id: ENSG00000211683
Gene Name: KB-1572G7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
860-875
0.019
1
8mer
591-606
0.012
0
8mer+wobble
179-204
0.011
0
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