LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
RP11-521O16.2
hsa-miR-92a-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564121
Biotype: lincRNA
Gene id: ENSG00000260163
Gene Name: RP11-521O16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3843-3861
0.047
1
6mer
2838-2853
0.002
1
RP11-449D8.1
hsa-miR-92a-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577994
Biotype: lincRNA
Gene id: ENSG00000265485
Gene Name: RP11-449D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2276-2298
0.040
1
6mer
1518-1531
0.004
1
6mer
1001-1014
0.002
1
6mer
1587-1601
0.002
0
AC023347.1
hsa-miR-92a-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435352
Biotype: lincRNA
Gene id: ENSG00000235774
Gene Name: AC023347.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
424-440
0.048
1
RP4-794H19.1
hsa-miR-92a-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423408
Biotype: lincRNA
Gene id: ENSG00000232453
Gene Name: RP4-794H19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
697-712
0.043
2
6mer
241-258
0.005
2
XLOC_008284
hsa-miR-92a-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017654
Biotype: transcript isomorph
Gene id: XLOC_008284
Gene Name: XLOC_008284
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-177
0.047
0
RP11-379B18.5
hsa-miR-92a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599350
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-47
0.035
3
7mer
254-274
0.012
1
RP11-266K4.13
hsa-miR-92a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
999-1013
0.047
1
RP11-46O21.2
hsa-miR-92a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448214
Biotype: antisense
Gene id: ENSG00000232342
Gene Name: RP11-46O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-325
0.032
1
7mer
371-392
0.016
0
RP11-379B18.5
hsa-miR-92a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601985
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-47
0.035
3
7mer
361-381
0.012
1
XLOC_005344
hsa-miR-92a-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011855
Biotype: transcript isomorph
Gene id: XLOC_005344
Gene Name: XLOC_005344
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-262
0.047
7
BHLHE40-AS1
hsa-miR-92a-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615178
Biotype: antisense
Gene id: ENSG00000235831
Gene Name: BHLHE40-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-75
0.034
0
7mer
1665-1683
0.005
1
6mer
1833-1849
0.004
3
6mer
1377-1402
0.003
1
AC097495.3
hsa-miR-92a-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415448
Biotype: lincRNA
Gene id: ENSG00000228329
Gene Name: AC097495.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
865-885
0.046
2
RP3-412A9.17
hsa-miR-92a-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3282-3297
0.016
1
7mer
9371-9392
0.004
0
8mer
7430-7445
0.004
0
6mer
7705-7719
0.002
3
8mer+wobble
15653-15668
0.002
1
6mer
15417-15431
0.002
1
8mer+wobble
15968-15983
0.002
Not Conserved
6mer
4557-4572
0.002
1
8mer+wobble
10270-10285
0.002
0
8mer+wobble
15168-15183
0.002
1
7mer
4589-4602
0.002
1
8mer+wobble
13761-13777
0.001
0
8mer+wobble
15490-15505
0.001
0
8mer+wobble
2957-2972
0.001
0
6mer
15666-15691
0.001
1
6mer
12189-12206
0.001
0
AC012123.1
hsa-miR-92a-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000426194
Biotype: antisense
Gene id: ENSG00000228835
Gene Name: AC012123.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
731-745
0.046
10
RP11-348N5.9
hsa-miR-92a-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619110
Biotype: antisense
Gene id: ENSG00000278601
Gene Name: RP11-348N5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-504
0.046
1
XLOC_009942
hsa-miR-92a-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020640
Biotype: transcript isomorph
Gene id: XLOC_009942
Gene Name: XLOC_009942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1207-1222
0.045
1
RP11-561E1.1
hsa-miR-92a-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520256
Biotype: antisense
Gene id: ENSG00000253643
Gene Name: RP11-561E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-539
0.045
1
RP11-244B22.6
hsa-miR-92a-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1028-1052
0.034
0
6mer
802-829
0.011
0
RP11-72M17.1
hsa-miR-92a-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556874
Biotype: lincRNA
Gene id: ENSG00000258561
Gene Name: RP11-72M17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
194-217
0.045
0
RP11-24M17.4
hsa-miR-92a-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000623240
Biotype: TEC
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1575-1580
0.045
1
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