LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
RNF219-AS1
hsa-miR-92a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607862
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4128-4145
0.024
10
7mer
4991-5012
0.015
6
6mer
278-301
0.005
2
6mer
5446-5469
0.004
1
6mer
5187-5208
0.003
1
6mer
2185-2197
0.002
1
6mer
5204-5220
0.002
2
AC006116.15
hsa-miR-92a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593258
Biotype: sense_intronic
Gene id: ENSG00000267429
Gene Name: AC006116.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-379
0.055
0
CTD-2140B24.6
hsa-miR-92a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000606110
Biotype: antisense
Gene id: ENSG00000271963
Gene Name: CTD-2140B24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-232
0.031
5
7mer
13-33
0.024
1
RP5-1007H16.1
hsa-miR-92a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609858
Biotype: lincRNA
Gene id: ENSG00000272745
Gene Name: RP5-1007H16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-568
0.054
0
XLOC_009645
hsa-miR-92a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020306
Biotype: transcript isomorph
Gene id: XLOC_009645
Gene Name: XLOC_009645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1727-1732
0.054
0
RP11-13E5.2
hsa-miR-92a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000438994
Biotype: lincRNA
Gene id: ENSG00000237208
Gene Name: RP11-13E5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-449
0.054
0
XLOC_010769
hsa-miR-92a-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-657
0.054
1
PRKCQ-AS1
hsa-miR-92a-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609346
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
472-486
0.054
1
LL22NC03-22D1.1
hsa-miR-92a-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8957-8973
0.010
0
7mer
10041-10060
0.007
0
7mer
21561-21582
0.006
1
7mer
16126-16145
0.005
1
8mer
10896-10922
0.004
Not Conserved
8mer
22053-22068
0.003
1
6mer
27946-27971
0.003
1
7mer
7226-7243
0.003
0
6mer
21024-21045
0.002
0
6mer
6559-6568
0.002
3
6mer
8691-8712
0.002
1
6mer
20034-20048
0.002
Not Conserved
6mer
6047-6065
0.002
1
6mer
11790-11813
0.001
1
6mer
6745-6762
0.001
0
6mer
24350-24371
0.001
0
6mer
6047-6071
0.001
0
RP11-1002K11.1
hsa-miR-92a-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607314
Biotype: lincRNA
Gene id: ENSG00000272327
Gene Name: RP11-1002K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1802-1814
0.041
8
6mer
1753-1757
0.013
11
RP11-300M24.1
hsa-miR-92a-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605741
Biotype: lincRNA
Gene id: ENSG00000227455
Gene Name: RP11-300M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-349
0.041
0
7mer
523-542
0.010
0
6mer
2716-2724
0.003
1
CTA-390C10.10
hsa-miR-92a-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609475
Biotype: sense_intronic
Gene id: ENSG00000272977
Gene Name: CTA-390C10.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3486-3506
0.026
1
8mer
14-29
0.014
0
7mer
3421-3434
0.012
1
6mer
2272-2296
0.001
2
CTD-2128A3.2
hsa-miR-92a-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557547
Biotype: lincRNA
Gene id: ENSG00000258902
Gene Name: CTD-2128A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-490
0.052
4
RP11-279O17.1
hsa-miR-92a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566208
Biotype: lincRNA
Gene id: ENSG00000261319
Gene Name: RP11-279O17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
68-94
0.052
2
RP11-506N2.1
hsa-miR-92a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513551
Biotype: lincRNA
Gene id: ENSG00000251339
Gene Name: RP11-506N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-193
0.052
0
CASC7
hsa-miR-92a-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-264
0.038
10
7mer
751-756
0.009
3
7mer
2983-3001
0.005
2
XLOC_000294
hsa-miR-92a-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9147-9157
0.024
1
9mer
3634-3649
0.007
0
8mer
3634-3656
0.006
0
7mer
4276-4298
0.004
1
8mer
7412-7427
0.004
1
8mer+wobble
229-244
0.003
0
6mer
3259-3275
0.002
3
8mer+wobble
6512-6527
0.001
Not Conserved
RP11-413E1.4
hsa-miR-92a-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429074
Biotype: sense_intronic
Gene id: ENSG00000230735
Gene Name: RP11-413E1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
210-230
0.051
1
RP11-767I20.1
hsa-miR-92a-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550678
Biotype: lincRNA
Gene id: ENSG00000257259
Gene Name: RP11-767I20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-608
0.034
1
7mer
161-186
0.009
0
6mer
26-37
0.008
4
LINC01342
hsa-miR-92a-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416774
Biotype: lincRNA
Gene id: ENSG00000223823
Gene Name: LINC01342
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1521-1538
0.051
0
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