LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
RP11-728E14.2
hsa-miR-92a-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582990
Biotype: lincRNA
Gene id: ENSG00000264023
Gene Name: RP11-728E14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-69
0.061
1
XLOC_008422
hsa-miR-92a-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018143
Biotype: transcript isomorph
Gene id: XLOC_008422
Gene Name: XLOC_008422
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-688
0.061
0
LINC01021
hsa-miR-92a-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514844
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
624-646
0.058
2
6mer
195-220
0.003
0
AC006548.28
hsa-miR-92a-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49901-49915
0.009
Not Conserved
8mer
36566-36593
0.007
1
7mer
49420-49430
0.005
Not Conserved
7mer
70704-70716
0.005
Not Conserved
7mer
56480-56499
0.004
0
7mer
30631-30649
0.003
0
8mer
44946-44959
0.003
0
6mer
32467-32471
0.002
0
6mer
59497-59515
0.002
1
6mer
1036-1058
0.002
Not Conserved
6mer
61223-61240
0.002
0
6mer
45078-45104
0.002
1
6mer
35581-35604
0.002
1
6mer
67837-67846
0.002
0
6mer
72325-72346
0.001
0
6mer
61415-61427
0.001
1
6mer
3075-3094
0.001
1
6mer
21377-21394
0.001
Not Conserved
6mer
2679-2700
0.001
0
6mer
20513-20533
0.001
0
6mer
59385-59400
0.001
0
6mer
61126-61152
0.001
1
6mer
44338-44356
0.001
Not Conserved
8mer+wobble
72203-72218
0.001
Not Conserved
AC007228.9
hsa-miR-92a-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602145
Biotype: lincRNA
Gene id: ENSG00000268568
Gene Name: AC007228.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-150
0.060
1
FAM66C
hsa-miR-92a-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000372173
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-363
0.060
1
CTB-83J4.2
hsa-miR-92a-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596330
Biotype: lincRNA
Gene id: ENSG00000269271
Gene Name: CTB-83J4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-99
0.060
1
RP11-1069G10.2
hsa-miR-92a-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557900
Biotype: lincRNA
Gene id: ENSG00000259727
Gene Name: RP11-1069G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1026-1052
0.059
1
XLOC_001515
hsa-miR-92a-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002929
Biotype: transcript isomorph
Gene id: XLOC_001515
Gene Name: XLOC_001515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1238-1259
0.039
0
7mer
1773-1792
0.015
1
6mer
1459-1485
0.004
4
LINC01021
hsa-miR-92a-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505775
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
903-925
0.056
2
6mer
195-220
0.003
0
MORC1-AS1
hsa-miR-92a-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000480826
Biotype: antisense
Gene id: ENSG00000239314
Gene Name: MORC1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
501-522
0.058
1
RP11-494M8.4
hsa-miR-92a-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533634
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-15
0.032
2
8mer
255-269
0.026
1
LINC01021
hsa-miR-92a-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503107
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-437
0.054
2
6mer
195-220
0.003
0
RP11-141C7.4
hsa-miR-92a-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608379
Biotype: lincRNA
Gene id: ENSG00000272792
Gene Name: RP11-141C7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-455
0.057
1
XLOC_009690
hsa-miR-92a-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020359
Biotype: transcript isomorph
Gene id: XLOC_009690
Gene Name: XLOC_009690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
440-466
0.057
0
XLOC_000950
hsa-miR-92a-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001620
Biotype: transcript isomorph
Gene id: XLOC_000950
Gene Name: XLOC_000950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
645-654
0.042
1
7mer
1400-1413
0.014
0
XLOC_013987
hsa-miR-92a-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028776
Biotype: transcript isomorph
Gene id: XLOC_013987
Gene Name: XLOC_013987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-138
0.056
1
AC068138.1
hsa-miR-92a-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423838
Biotype: lincRNA
Gene id: ENSG00000235070
Gene Name: AC068138.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-18
0.051
1
6mer
514-533
0.004
2
AC068039.4
hsa-miR-92a-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-449
0.036
0
6mer
522-536
0.010
0
6mer
636-657
0.010
0
AC005154.6
hsa-miR-92a-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584023
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
445-471
0.055
0
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