LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
PRKCQ-AS1
hsa-miR-92a-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609627
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
333-347
0.074
1
XLOC_008826
hsa-miR-92a-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-577
0.053
1
7mer
290-317
0.020
0
XLOC_007850
hsa-miR-92a-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016868
Biotype: transcript isomorph
Gene id: XLOC_007850
Gene Name: XLOC_007850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
17-42
0.072
Not Conserved
RP11-378J18.9
hsa-miR-92a-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000617276
Biotype: lincRNA
Gene id: ENSG00000276997
Gene Name: RP11-378J18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-90
0.072
1
FAM66C
hsa-miR-92a-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535567
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
671-686
0.072
1
XLOC_001108
hsa-miR-92a-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002525
Biotype: transcript isomorph
Gene id: XLOC_001108
Gene Name: XLOC_001108
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-340
0.071
2
XLOC_009914
hsa-miR-92a-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020597
Biotype: transcript isomorph
Gene id: XLOC_009914
Gene Name: XLOC_009914
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
551-576
0.064
1
6mer
782-792
0.007
1
XLOC_010670
hsa-miR-92a-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022065
Biotype: transcript isomorph
Gene id: XLOC_010670
Gene Name: XLOC_010670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-505
0.068
7
6mer
1675-1692
0.003
1
AC007422.1
hsa-miR-92a-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433065
Biotype: lincRNA
Gene id: ENSG00000224173
Gene Name: AC007422.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-466
0.047
0
7mer
975-994
0.019
1
6mer
666-692
0.004
4
RP11-96P7.1
hsa-miR-92a-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000512279
Biotype: lincRNA
Gene id: ENSG00000250514
Gene Name: RP11-96P7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1700-1722
0.050
2
8mer
2116-2140
0.016
1
6mer
417-439
0.004
1
MIR4534
hsa-miR-92a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
664-676
0.012
6
8mer
1150-1165
0.006
1
8mer
11495-11510
0.004
1
8mer
16263-16278
0.003
1
7mer
8108-8130
0.003
0
6mer
54035-54050
0.003
1
8mer+wobble
54417-54432
0.003
0
8mer
7781-7796
0.003
1
7mer
12557-12579
0.002
0
7mer
12471-12488
0.002
Not Conserved
8mer+wobble
975-990
0.002
0
6mer
47162-47177
0.002
1
8mer+wobble
14678-14693
0.002
1
8mer+wobble
14980-14995
0.002
1
8mer+wobble
2132-2147
0.002
0
6mer
19463-19477
0.002
0
8mer+wobble
46210-46225
0.002
0
6mer
22532-22555
0.002
1
6mer
28605-28632
0.001
1
6mer
30809-30827
0.001
0
8mer+wobble
14382-14397
0.001
0
6mer
7233-7260
0.001
0
8mer+wobble
42813-42828
0.001
1
7mer
46675-46700
0.001
0
8mer+wobble
5994-6009
0.001
1
8mer+wobble
29012-29027
0.001
1
6mer
30184-30204
0.001
1
7mer
42858-42869
0.001
0
7mer
2132-2154
0.001
0
8mer+wobble
3507-3522
0.001
0
8mer+wobble
7374-7389
0.001
1
6mer
3519-3545
0.000
0
PCAT19
hsa-miR-92a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1456-1471
0.019
1
6mer
24-48
0.018
1
6mer
736-758
0.012
1
6mer
958-970
0.006
1
7mer
1420-1445
0.006
1
6mer
1190-1213
0.005
1
6mer
3215-3219
0.004
Not Conserved
RP11-244H18.3
hsa-miR-92a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000611741
Biotype: lincRNA
Gene id: ENSG00000273558
Gene Name: RP11-244H18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1596-1603
0.062
0
6mer
1798-1819
0.008
0
RP13-216E22.4
hsa-miR-92a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000444482
Biotype: lincRNA
Gene id: ENSG00000228906
Gene Name: RP13-216E22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-55
0.070
1
XLOC_010799
hsa-miR-92a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022470
Biotype: transcript isomorph
Gene id: XLOC_010799
Gene Name: XLOC_010799
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-296
0.049
11
7mer
75-98
0.021
7
RP11-711D18.2
hsa-miR-92a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000557474
Biotype: lincRNA
Gene id: ENSG00000258435
Gene Name: RP11-711D18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
135-160
0.069
1
STX18-AS1
hsa-miR-92a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610009
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2311-2333
0.059
4
7mer
232-253
0.010
1
RP11-162I7.1
hsa-miR-92a-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561386
Biotype: lincRNA
Gene id: ENSG00000259284
Gene Name: RP11-162I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
869-891
0.057
6
6mer
62-77
0.006
2
6mer
62-88
0.005
1
LINC01428
hsa-miR-92a-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449581
Biotype: lincRNA
Gene id: ENSG00000228888
Gene Name: LINC01428
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
68-85
0.068
1
RP11-20D14.6
hsa-miR-92a-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000514568
Biotype: lincRNA
Gene id: ENSG00000249790
Gene Name: RP11-20D14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1949-1954
0.055
0
7mer
34-39
0.014
Not Conserved
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