LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
PCAT19
hsa-miR-92a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-323
0.051
1
7mer
272-297
0.028
1
6mer
42-65
0.011
1
LOC101926935
hsa-miR-92a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3505-3517
0.083
0
7mer
1598-1619
0.003
Not Conserved
7mer
2635-2649
0.002
Not Conserved
XLOC_009222
hsa-miR-92a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6052-6067
0.071
0
6mer
5796-5804
0.016
0
AC125421.1
hsa-miR-92a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000455366
Biotype: lincRNA
Gene id: ENSG00000234721
Gene Name: AC125421.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2405-2429
0.083
6
6mer
1982-2004
0.004
1
RP11-278I4.2
hsa-miR-92a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
403-427
0.044
0
7mer
645-670
0.018
4
6mer
976-996
0.012
9
6mer
926-930
0.008
8
6mer
829-839
0.004
4
LINC01021
hsa-miR-92a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512067
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
993-1019
0.032
1
8mer
868-881
0.029
4
7mer
1263-1285
0.014
1
6mer
1364-1391
0.004
1
6mer
1456-1475
0.004
Not Conserved
6mer
210-235
0.003
0
RP11-552M11.8
hsa-miR-92a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564771
Biotype: sense_overlapping
Gene id: ENSG00000260948
Gene Name: RP11-552M11.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-123
0.062
1
8mer+wobble
1512-1537
0.013
2
6mer
9-31
0.007
1
6mer
1231-1244
0.004
1
EPB41L4A-AS2
hsa-miR-92a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_027706.1
Biotype: lincRNA
Gene id: NR_027706.1 (gene)
Gene Name: EPB41L4A-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1321-1343
0.074
0
7mer
936-955
0.009
4
RP11-190C22.8
hsa-miR-92a-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609598
Biotype: lincRNA
Gene id: ENSG00000272662
Gene Name: RP11-190C22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
388-408
0.083
2
XLOC_004323
hsa-miR-92a-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009910
Biotype: transcript isomorph
Gene id: XLOC_004323
Gene Name: XLOC_004323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5448-5470
0.039
2
8mer
2698-2711
0.015
4
9mer
2823-2849
0.012
1
7mer
3093-3115
0.005
1
6mer
218-243
0.003
0
6mer
4921-4935
0.003
Not Conserved
6mer
4672-4691
0.002
2
6mer
1122-1143
0.001
0
6mer
3194-3221
0.001
1
6mer
3286-3305
0.001
Not Conserved
RP11-475A13.2
hsa-miR-92a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1749-1775
0.052
1
6mer
296-322
0.015
1
6mer
1963-1989
0.013
1
XLOC_009788
hsa-miR-92a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020456
Biotype: transcript isomorph
Gene id: XLOC_009788
Gene Name: XLOC_009788
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3362-3380
0.048
8
7mer
80-98
0.029
3
6mer
1190-1205
0.003
1
AC093627.10
hsa-miR-92a-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000484550
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-117
0.064
1
6mer
4552-4556
0.007
1
6mer
4575-4591
0.006
1
8mer+wobble
1762-1777
0.002
0
XLOC_009080
hsa-miR-92a-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019074
Biotype: transcript isomorph
Gene id: XLOC_009080
Gene Name: XLOC_009080
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3116-3140
0.073
1
7mer
651-676
0.005
0
RP11-508N22.12
hsa-miR-92a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2495-2515
0.053
1
6mer
83-92
0.008
0
6mer
6726-6752
0.007
0
8mer+wobble
2074-2089
0.004
1
6mer
6513-6533
0.003
0
XLOC_011179
hsa-miR-92a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023310
Biotype: transcript isomorph
Gene id: XLOC_011179
Gene Name: XLOC_011179
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-605
0.045
1
8mer+wobble
27-43
0.030
1
XLOC_010008
hsa-miR-92a-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021285
Biotype: transcript isomorph
Gene id: XLOC_010008
Gene Name: XLOC_010008
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-369
0.075
0
XLOC_012784
hsa-miR-92a-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2130-2144
0.060
0
6mer
1815-1840
0.015
0
CTD-2541J13.1
hsa-miR-92a-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562669
Biotype: lincRNA
Gene id: ENSG00000260578
Gene Name: CTD-2541J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2194-2215
0.037
1
8mer
602-618
0.032
1
6mer
2790-2814
0.003
0
6mer
1266-1275
0.002
0
RP11-92B11.3
hsa-miR-92a-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578710
Biotype: antisense
Gene id: ENSG00000264673
Gene Name: RP11-92B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-144
0.074
0
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