LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_001612
hsa-miR-92a-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002651
Biotype: transcript isomorph
Gene id: XLOC_001612
Gene Name: XLOC_001612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-494
0.042
0
XLOC_010017
hsa-miR-92a-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020167
Biotype: transcript isomorph
Gene id: XLOC_010017
Gene Name: XLOC_010017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-274
0.026
1
7mer
18-23
0.016
1
XLOC_013011
hsa-miR-92a-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026953
Biotype: transcript isomorph
Gene id: XLOC_013011
Gene Name: XLOC_013011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
430-435
0.042
0
AC007308.6
hsa-miR-92a-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430719
Biotype: antisense
Gene id: ENSG00000234252
Gene Name: AC007308.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-39
0.042
1
RP11-212I21.2
hsa-miR-92a-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565307
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-61
0.042
11
RP1-46F2.3
hsa-miR-92a-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548329
Biotype: lincRNA
Gene id: ENSG00000258240
Gene Name: RP1-46F2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
514-540
0.021
0
8mer
198-213
0.010
0
7mer
191-213
0.010
0
XLOC_008297
hsa-miR-92a-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017638
Biotype: transcript isomorph
Gene id: XLOC_008297
Gene Name: XLOC_008297
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-458
0.036
0
8mer+wobble
76-91
0.006
0
CTA-292E10.9
hsa-miR-92a-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1361-1379
0.007
Not Conserved
7mer
22769-22787
0.005
1
8mer
8672-8687
0.003
1
8mer
5697-5720
0.003
1
8mer
5514-5527
0.003
1
8mer+wobble
454-469
0.003
0
8mer
23162-23177
0.002
1
6mer
15171-15187
0.002
3
8mer+wobble
24014-24029
0.002
0
6mer
17605-17621
0.002
2
8mer+wobble
5697-5712
0.002
1
6mer
2707-2723
0.002
1
8mer+wobble
14293-14308
0.001
1
8mer+wobble
6129-6144
0.001
0
8mer+wobble
17080-17095
0.001
1
8mer+wobble
22142-22157
0.001
0
8mer+wobble
9295-9310
0.001
0
8mer+wobble
21813-21828
0.001
0
RPL34-AS1
hsa-miR-92a-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507248
Biotype: lincRNA
Gene id: ENSG00000234492
Gene Name: RPL34-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-33
0.026
3
8mer
446-464
0.013
1
6mer
2890-2915
0.003
1
RP11-509A17.3
hsa-miR-92a-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-513
0.026
0
8mer+wobble
613-628
0.016
1
RP11-335E6.4
hsa-miR-92a-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447183
Biotype: lincRNA
Gene id: ENSG00000271593
Gene Name: RP11-335E6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-388
0.027
2
7mer
193-214
0.015
1
RP11-360L9.7
hsa-miR-92a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000578500
Biotype: antisense
Gene id: ENSG00000253174
Gene Name: RP11-360L9.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
831-843
0.042
Not Conserved
RP11-346J10.1
hsa-miR-92a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511468
Biotype: lincRNA
Gene id: ENSG00000249787
Gene Name: RP11-346J10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-146
0.042
0
ATP1A1-AS1
hsa-miR-92a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000493908
Biotype: processed_transcript
Gene id: ENSG00000203865
Gene Name: ATP1A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-42
0.042
8
RP11-65J3.3
hsa-miR-92a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436510
Biotype: lincRNA
Gene id: ENSG00000230676
Gene Name: RP11-65J3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-27
0.039
Not Conserved
6mer
927-940
0.003
3
RP11-277P12.20
hsa-miR-92a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500682
Biotype: antisense
Gene id: ENSG00000245648
Gene Name: RP11-277P12.20
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2003-2029
0.016
0
7mer
2243-2256
0.013
1
7mer
2279-2292
0.005
0
7mer
1299-1326
0.004
0
6mer
2778-2799
0.003
0
6mer
1367-1386
0.001
1
CTD-3162L10.1
hsa-miR-92a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600983
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1839-1855
0.035
1
8mer
220-234
0.006
Not Conserved
RP11-717D12.1
hsa-miR-92a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000398957
Biotype: sense_intronic
Gene id: ENSG00000214773
Gene Name: RP11-717D12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-148
0.042
1
XLOC_010106
hsa-miR-92a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020820
Biotype: transcript isomorph
Gene id: XLOC_010106
Gene Name: XLOC_010106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2476-2500
0.034
1
6mer
100-110
0.008
2
ZNF571-AS1
hsa-miR-92a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590838
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
921-945
0.041
1
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