LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010514
hsa-miR-708-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021918
Biotype: transcript isomorph
Gene id: XLOC_010514
Gene Name: XLOC_010514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
892-910
0.033
0
7mer
731-750
0.010
0
XLOC_010009
hsa-miR-708-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020710
Biotype: transcript isomorph
Gene id: XLOC_010009
Gene Name: XLOC_010009
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-525
0.043
1
LINC00999
hsa-miR-708-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024497.2
Biotype: lincRNA
Gene id: NR_024497.2 (gene)
Gene Name: LINC00999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4907-4922
0.012
0
7mer
4683-4705
0.006
1
7mer
4937-4954
0.003
0
7mer
4291-4317
0.003
0
6mer
895-918
0.003
0
7mer
4402-4416
0.002
0
7mer
1091-1109
0.002
0
7mer
1896-1910
0.002
0
7mer
1666-1684
0.002
0
7mer
1186-1204
0.002
0
6mer
4452-4468
0.001
0
7mer
3514-3540
0.001
Not Conserved
8mer
2288-2308
0.001
Not Conserved
7mer
1344-1365
0.001
Not Conserved
6mer
2370-2389
0.001
0
6mer
3196-3217
0.001
Not Conserved
6mer
1946-1962
0.000
Not Conserved
RP11-765K14.1
hsa-miR-708-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508790
Biotype: lincRNA
Gene id: ENSG00000250263
Gene Name: RP11-765K14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-570
0.037
0
7mer
385-401
0.007
1
RP1-297M16.2
hsa-miR-708-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431947
Biotype: lincRNA
Gene id: ENSG00000231883
Gene Name: RP1-297M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-136
0.041
0
7mer
644-662
0.003
0
XLOC_012735
hsa-miR-708-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026385
Biotype: transcript isomorph
Gene id: XLOC_012735
Gene Name: XLOC_012735
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
955-981
0.009
1
7mer
825-851
0.008
1
7mer
695-721
0.007
1
7mer
890-916
0.006
0
7mer
629-655
0.006
1
7mer
574-589
0.005
0
7mer
759-785
0.004
Not Conserved
RP11-478P10.1
hsa-miR-708-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510444
Biotype: lincRNA
Gene id: ENSG00000249584
Gene Name: RP11-478P10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3645-3662
0.029
0
7mer
1213-1236
0.011
5
6mer
3087-3111
0.002
0
6mer
1555-1581
0.002
1
XLOC_006016
hsa-miR-708-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013381
Biotype: transcript isomorph
Gene id: XLOC_006016
Gene Name: XLOC_006016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-610
0.041
3
6mer
21-39
0.003
3
RP11-478P10.1
hsa-miR-708-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109900.1
Biotype: lincRNA
Gene id: NR_109900.1 (gene)
Gene Name: RP11-478P10.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3641-3658
0.029
0
7mer
1209-1232
0.011
5
6mer
3083-3107
0.002
0
6mer
1551-1577
0.002
1
XLOC_002909
hsa-miR-708-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005388
Biotype: transcript isomorph
Gene id: XLOC_002909
Gene Name: XLOC_002909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-141
0.032
3
6mer
3157-3172
0.007
4
7mer
2116-2132
0.004
0
MLK7-AS1
hsa-miR-708-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423106
Biotype: antisense
Gene id: ENSG00000238133
Gene Name: MLK7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
523-539
0.043
12
LINC01001
hsa-miR-708-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526704
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-130
0.009
Not Conserved
8mer
598-614
0.006
Not Conserved
7mer
309-331
0.005
0
8mer
847-863
0.004
Not Conserved
7mer
2002-2020
0.004
0
6mer
2193-2216
0.003
Not Conserved
7mer
815-833
0.003
0
7mer
83-100
0.002
Not Conserved
7mer
1065-1090
0.002
Not Conserved
7mer
1907-1925
0.002
Not Conserved
7mer
1746-1767
0.001
Not Conserved
7mer
1424-1438
0.001
Not Conserved
LINC01330
hsa-miR-708-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481578
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-141
0.032
3
6mer
2238-2253
0.007
4
7mer
1197-1213
0.004
0
JAKMIP2-AS1
hsa-miR-708-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038902.1
Biotype: antisense
Gene id: NR_038902.1 (gene)
Gene Name: JAKMIP2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1218-1238
0.040
13
6mer
1394-1415
0.003
3
PART1
hsa-miR-708-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515734
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
406-425
0.039
9
6mer
858-875
0.003
2
CTD-2377D24.6
hsa-miR-708-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000492522
Biotype: lincRNA
Gene id: ENSG00000244649
Gene Name: CTD-2377D24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-111
0.039
0
6mer
201-222
0.003
1
RP11-54H7.4
hsa-miR-708-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618966
Biotype: lincRNA
Gene id: ENSG00000275216
Gene Name: RP11-54H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
398-415
0.037
0
6mer
731-754
0.003
0
6mer
2599-2624
0.002
1
RP5-1033H22.2
hsa-miR-708-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427243
Biotype: antisense
Gene id: ENSG00000224093
Gene Name: RP5-1033H22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-95
0.022
7
7mer
59-82
0.014
10
6mer
119-137
0.006
7
RP5-1033H22.2
hsa-miR-708-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417401
Biotype: antisense
Gene id: ENSG00000224093
Gene Name: RP5-1033H22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-95
0.022
7
7mer
59-82
0.014
10
6mer
119-137
0.006
7
CTA-796E4.5
hsa-miR-708-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26855-26876
0.013
2
9mer
21544-21565
0.008
1
7mer
15498-15517
0.004
1
6mer
31347-31365
0.003
0
6mer
10666-10689
0.003
6
7mer
19919-19932
0.002
1
7mer
12947-12970
0.002
0
6mer
4016-4042
0.002
0
6mer
22404-22422
0.002
1
6mer
17540-17559
0.001
1
6mer
8477-8490
0.001
1
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