LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-508N22.13
hsa-miR-708-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609019
Biotype: lincRNA
Gene id: ENSG00000273019
Gene Name: RP11-508N22.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-252
0.046
0
AC011306.1
hsa-miR-708-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451034
Biotype: lincRNA
Gene id: ENSG00000229805
Gene Name: AC011306.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-358
0.039
0
6mer
500-523
0.007
2
FAM201A
hsa-miR-708-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000484285
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-844
0.018
1
6mer
66-86
0.014
1
6mer
812-827
0.006
1
7mer
403-420
0.004
0
6mer
664-680
0.004
0
U82695.10
hsa-miR-708-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569962
Biotype: lincRNA
Gene id: ENSG00000259886
Gene Name: U82695.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
335-357
0.031
1
6mer
271-294
0.005
1
6mer
2127-2142
0.004
3
8mer+wobble
1270-1287
0.003
0
6mer
2407-2431
0.002
0
RP11-408A13.4
hsa-miR-708-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610061
Biotype: lincRNA
Gene id: ENSG00000272871
Gene Name: RP11-408A13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1222-1241
0.038
1
6mer
428-449
0.007
2
XLOC_013669
hsa-miR-708-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027881
Biotype: transcript isomorph
Gene id: XLOC_013669
Gene Name: XLOC_013669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1196-1218
0.025
3
7mer
462-479
0.013
2
6mer
86-109
0.005
1
6mer
82-109
0.003
1
XLOC_002100
hsa-miR-708-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002752
Biotype: transcript isomorph
Gene id: XLOC_002100
Gene Name: XLOC_002100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3107-3121
0.037
0
6mer
3263-3286
0.006
2
6mer
1157-1172
0.001
0
RP11-1E6.1
hsa-miR-708-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507388
Biotype: lincRNA
Gene id: ENSG00000250657
Gene Name: RP11-1E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-233
0.019
1
9mer
460-479
0.019
3
6mer
512-534
0.007
4
AC012363.4
hsa-miR-708-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455707
Biotype: antisense
Gene id: ENSG00000224789
Gene Name: AC012363.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-121
0.045
3
RP11-324L17.1
hsa-miR-708-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608775
Biotype: lincRNA
Gene id: ENSG00000272551
Gene Name: RP11-324L17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
254-273
0.045
2
XLOC_004858
hsa-miR-708-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009685
Biotype: transcript isomorph
Gene id: XLOC_004858
Gene Name: XLOC_004858
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-71
0.033
4
6mer
159-185
0.006
3
6mer
65-82
0.005
1
XLOC_010719
hsa-miR-708-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022108
Biotype: transcript isomorph
Gene id: XLOC_010719
Gene Name: XLOC_010719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
225-251
0.043
1
6mer
3418-3442
0.002
Not Conserved
RP11-496H1.2
hsa-miR-708-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608482
Biotype: lincRNA
Gene id: ENSG00000273308
Gene Name: RP11-496H1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-80
0.024
1
6mer
173-185
0.016
1
6mer
111-130
0.005
0
TTTY10
hsa-miR-708-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1330-1346
0.028
0
6mer
1488-1509
0.017
0
RP11-75N4.2
hsa-miR-708-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_045216.1
Biotype: antisense
Gene id: NR_045216.1 (gene)
Gene Name: RP11-75N4.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-148
0.026
2
7mer
1831-1853
0.010
0
6mer
575-586
0.007
7
6mer
419-441
0.002
1
RP11-75N4.2
hsa-miR-708-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583706
Biotype: antisense
Gene id: ENSG00000264859
Gene Name: RP11-75N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-148
0.026
2
7mer
1869-1891
0.010
0
6mer
575-586
0.007
7
6mer
419-441
0.002
1
XLOC_013274
hsa-miR-708-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2026-2050
0.019
1
6mer
5685-5712
0.009
1
7mer
5553-5574
0.006
0
8mer+wobble
2735-2754
0.004
0
6mer
5173-5190
0.003
0
6mer
1403-1430
0.003
0
XLOC_001916
hsa-miR-708-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005041
Biotype: transcript isomorph
Gene id: XLOC_001916
Gene Name: XLOC_001916
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-35
0.029
1
8mer
530-554
0.015
1
XLOC_001363
hsa-miR-708-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003586
Biotype: transcript isomorph
Gene id: XLOC_001363
Gene Name: XLOC_001363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-41
0.035
2
7mer
247-269
0.008
1
CTD-2609K8.3
hsa-miR-708-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531268
Biotype: sense_intronic
Gene id: ENSG00000255165
Gene Name: CTD-2609K8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
220-245
0.044
0
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