LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-360K13.1
hsa-miR-708-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527528
Biotype: lincRNA
Gene id: ENSG00000254587
Gene Name: RP11-360K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-280
0.040
1
6mer
1178-1205
0.007
3
MCM3AP-AS1
hsa-miR-708-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000590829
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-284
0.013
3
8mer
87-101
0.013
1
7mer
70-87
0.013
4
6mer
281-297
0.004
4
6mer
132-157
0.004
1
RP11-357K6.2
hsa-miR-708-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538783
Biotype: lincRNA
Gene id: ENSG00000255814
Gene Name: RP11-357K6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-298
0.040
1
7mer
260-273
0.007
0
LINC01128
hsa-miR-708-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_047525.1
Biotype: lincRNA
Gene id: NR_047525.1 (gene)
Gene Name: LINC01128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1067-1089
0.017
1
8mer
6036-6059
0.012
0
7mer
1294-1309
0.007
0
8mer
3681-3701
0.007
0
6mer
3488-3505
0.002
2
6mer
1726-1750
0.002
1
XLOC_008461
hsa-miR-708-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017672
Biotype: transcript isomorph
Gene id: XLOC_008461
Gene Name: XLOC_008461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5845-5860
0.013
0
7mer
5621-5643
0.007
1
7mer
5229-5255
0.003
0
6mer
1057-1074
0.003
1
7mer
5875-5892
0.003
0
7mer
5340-5354
0.002
0
6mer
1833-1856
0.002
0
7mer
2834-2848
0.002
0
7mer
2604-2622
0.002
0
8mer
3226-3246
0.002
Not Conserved
7mer
2029-2047
0.001
0
7mer
4452-4478
0.001
Not Conserved
6mer
5390-5406
0.001
0
7mer
2124-2142
0.001
0
6mer
3308-3327
0.001
0
7mer
2282-2303
0.001
Not Conserved
6mer
4134-4155
0.001
Not Conserved
6mer
2884-2900
0.000
Not Conserved
RP11-445O3.3
hsa-miR-708-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
588-610
0.025
0
6mer
2345-2358
0.011
0
6mer
1392-1410
0.009
0
6mer
1362-1377
0.001
Not Conserved
6mer
1344-1365
0.001
Not Conserved
6mer
1353-1365
0.001
Not Conserved
6mer
1335-1356
0.001
Not Conserved
XLOC_007647
hsa-miR-708-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016271
Biotype: transcript isomorph
Gene id: XLOC_007647
Gene Name: XLOC_007647
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-123
0.047
2
AC097461.4
hsa-miR-708-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446709
Biotype: antisense
Gene id: ENSG00000234193
Gene Name: AC097461.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-82
0.047
1
RP11-744K17.1
hsa-miR-708-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2660-2677
0.023
1
6mer
601-628
0.010
1
7mer
1727-1749
0.006
1
6mer
4059-4073
0.004
0
6mer
2283-2297
0.004
1
RP11-212I21.5
hsa-miR-708-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000611626
Biotype: lincRNA
Gene id: ENSG00000274508
Gene Name: RP11-212I21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-135
0.020
1
8mer
55-66
0.019
0
6mer
489-514
0.007
1
XLOC_000964
hsa-miR-708-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001629
Biotype: transcript isomorph
Gene id: XLOC_000964
Gene Name: XLOC_000964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-246
0.026
4
8mer
2517-2531
0.015
2
6mer
569-591
0.003
1
6mer
975-996
0.002
0
6mer
952-973
0.001
0
XLOC_014019
hsa-miR-708-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029091
Biotype: transcript isomorph
Gene id: XLOC_014019
Gene Name: XLOC_014019
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3750-3776
0.030
1
6mer
485-504
0.006
3
6mer
553-575
0.005
2
6mer
1008-1019
0.003
4
6mer
1728-1752
0.001
2
GAS6-AS2
hsa-miR-708-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_044993.1
Biotype: lincRNA
Gene id: NR_044993.1 (gene)
Gene Name: GAS6-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
834-852
0.035
0
7mer
673-692
0.011
0
GAS6-AS2
hsa-miR-708-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608651
Biotype: lincRNA
Gene id: ENSG00000272695
Gene Name: GAS6-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
843-861
0.035
0
7mer
682-701
0.011
0
NR2F2-AS1
hsa-miR-708-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558929
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-333
0.041
6
7mer
252-274
0.005
4
RP1-225E12.3
hsa-miR-708-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000616537
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
957-980
0.046
6
RP11-809N8.2
hsa-miR-708-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000544674
Biotype: antisense
Gene id: ENSG00000256928
Gene Name: RP11-809N8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
677-703
0.036
2
6mer
129-141
0.006
5
6mer
364-388
0.004
0
NUTM2A-AS1
hsa-miR-708-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420424
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-304
0.033
0
6mer
222-241
0.005
1
6mer
213-228
0.004
1
6mer
531-554
0.004
1
XLOC_012981
hsa-miR-708-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1426-1437
0.025
1
6mer
262-287
0.013
1
6mer
724-744
0.006
0
6mer
1457-1479
0.001
0
MBNL1-AS1
hsa-miR-708-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608395
Biotype: antisense
Gene id: ENSG00000229619
Gene Name: MBNL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
408-430
0.021
0
8mer
6367-6391
0.011
1
7mer
6197-6220
0.008
1
8mer
2991-3008
0.006
1
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