LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
XLOC_006505
hsa-miR-708-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013867
Biotype: transcript isomorph
Gene id: XLOC_006505
Gene Name: XLOC_006505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-451
0.041
0
7mer
327-350
0.009
0
NR2F2-AS1
hsa-miR-708-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000502125
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1610-1633
0.040
6
7mer
1248-1267
0.006
1
7mer
1552-1574
0.004
4
PART1
hsa-miR-708-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028508.1
Biotype: antisense
Gene id: NR_028508.1 (gene)
Gene Name: PART1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-206
0.046
9
6mer
639-656
0.004
2
XLOC_014172
hsa-miR-708-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029529
Biotype: transcript isomorph
Gene id: XLOC_014172
Gene Name: XLOC_014172
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4370-4385
0.023
1
8mer
1852-1872
0.013
0
7mer
4231-4252
0.005
2
6mer
182-207
0.003
1
6mer
3636-3656
0.002
0
7mer
4009-4033
0.002
0
6mer
3939-3960
0.001
0
6mer
3688-3703
0.001
0
XLOC_005332
hsa-miR-708-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011845
Biotype: transcript isomorph
Gene id: XLOC_005332
Gene Name: XLOC_005332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1184-1202
0.031
1
7mer
256-274
0.014
0
6mer
342-365
0.004
0
RP11-338C15.5
hsa-miR-708-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427949
Biotype: antisense
Gene id: ENSG00000235862
Gene Name: RP11-338C15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1860-1884
0.019
1
7mer
2143-2162
0.008
1
6mer
1830-1857
0.006
6
6mer
1752-1776
0.004
2
6mer
505-528
0.003
5
6mer
2007-2032
0.003
2
6mer
1593-1613
0.003
2
6mer
1135-1153
0.002
1
FAM201A
hsa-miR-708-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377680
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-833
0.019
1
6mer
3308-3325
0.011
0
6mer
801-816
0.006
1
6mer
30-49
0.005
0
7mer
392-409
0.004
0
6mer
653-669
0.003
0
CTB-113D17.1
hsa-miR-708-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609389
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-643
0.049
2
RP11-204N11.2
hsa-miR-708-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555889
Biotype: lincRNA
Gene id: ENSG00000258379
Gene Name: RP11-204N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-62
0.049
0
RP11-104H15.7
hsa-miR-708-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575310
Biotype: processed_transcript
Gene id: ENSG00000262880
Gene Name: RP11-104H15.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-380
0.025
9
8mer
660-680
0.020
8
6mer
913-939
0.003
5
6mer
928-949
0.001
5
MCM3AP-AS1
hsa-miR-708-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000421927
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2092-2107
0.023
5
7mer
134-151
0.010
4
8mer
151-165
0.010
1
6mer
196-221
0.003
1
6mer
1397-1417
0.002
1
C21orf90
hsa-miR-708-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000354333
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-396
0.037
0
6mer
187-205
0.004
1
6mer
948-968
0.003
1
6mer
2155-2173
0.002
0
6mer
1125-1146
0.002
0
RP11-216M21.7
hsa-miR-708-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1036-1057
0.029
0
6mer
2476-2502
0.015
0
6mer
1027-1044
0.005
0
NR2F2-AS1
hsa-miR-708-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560170
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-254
0.042
6
7mer
173-195
0.006
4
XLOC_009499
hsa-miR-708-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019701
Biotype: transcript isomorph
Gene id: XLOC_009499
Gene Name: XLOC_009499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1379-1394
0.038
3
6mer
316-333
0.004
4
6mer
575-594
0.003
3
6mer
983-997
0.003
3
RP5-872K7.7
hsa-miR-708-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000434043
Biotype: antisense
Gene id: ENSG00000228604
Gene Name: RP5-872K7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-160
0.034
0
6mer
175-188
0.009
4
8mer
288-300
0.005
0
LINC01128
hsa-miR-708-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445118
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1183-1205
0.019
1
8mer
6152-6175
0.012
0
7mer
1410-1425
0.006
0
8mer
3797-3817
0.006
0
6mer
3604-3621
0.002
2
6mer
1842-1866
0.002
1
RP11-369C8.1
hsa-miR-708-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557602
Biotype: lincRNA
Gene id: ENSG00000258616
Gene Name: RP11-369C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-329
0.048
2
RP11-384K6.6
hsa-miR-708-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567913
Biotype: lincRNA
Gene id: ENSG00000260404
Gene Name: RP11-384K6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4334-4356
0.010
1
6mer
308-330
0.004
1
8mer
2442-2458
0.004
0
7mer
3836-3851
0.004
Not Conserved
7mer
3766-3787
0.003
Not Conserved
7mer
2211-2236
0.003
0
7mer
1734-1752
0.002
0
6mer
1086-1109
0.002
0
8mer
3102-3120
0.002
Not Conserved
7mer
1282-1300
0.002
0
7mer
4208-4230
0.002
Not Conserved
7mer
3005-3023
0.002
Not Conserved
6mer
3991-4009
0.002
Not Conserved
7mer
4023-4041
0.002
Not Conserved
7mer
1535-1556
0.001
0
7mer
3322-3341
0.001
Not Conserved
7mer
1377-1395
0.001
Not Conserved
7mer
3131-3152
0.001
Not Conserved
7mer
1865-1878
0.000
Not Conserved
7mer
2469-2490
0.000
Not Conserved
CTC-366B18.2
hsa-miR-708-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511329
Biotype: antisense
Gene id: ENSG00000248881
Gene Name: CTC-366B18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
689-701
0.048
1
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