LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
AF001548.6
hsa-miR-708-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577048
Biotype: antisense
Gene id: ENSG00000263065
Gene Name: AF001548.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-544
0.040
7
7mer
394-418
0.015
9
LINC00665
hsa-miR-708-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000449434
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-101
0.032
1
6mer
95-121
0.023
1
RP11-804A23.2
hsa-miR-708-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000539897
Biotype: antisense
Gene id: ENSG00000255959
Gene Name: RP11-804A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-373
0.055
3
RP5-1172N10.4
hsa-miR-708-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602481
Biotype: sense_intronic
Gene id: ENSG00000269941
Gene Name: RP5-1172N10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-53
0.055
6
RP3-496C20.1
hsa-miR-708-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000569912
Biotype: antisense
Gene id: ENSG00000261202
Gene Name: RP3-496C20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1344-1368
0.030
3
7mer
1294-1312
0.015
7
7mer
414-425
0.008
3
6mer
369-388
0.002
2
RP11-48B3.4
hsa-miR-708-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569134
Biotype: lincRNA
Gene id: ENSG00000260317
Gene Name: RP11-48B3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-435
0.048
1
7mer
806-826
0.006
1
LINC01038
hsa-miR-708-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000457858
Biotype: lincRNA
Gene id: ENSG00000229011
Gene Name: LINC01038
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-121
0.054
5
MCM3AP-AS1
hsa-miR-708-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432735
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2114-2129
0.023
5
7mer
156-173
0.014
4
8mer
173-187
0.011
1
6mer
218-243
0.003
1
6mer
1419-1439
0.002
1
RP11-556G22.3
hsa-miR-708-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505528
Biotype: antisense
Gene id: ENSG00000250092
Gene Name: RP11-556G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-528
0.054
0
LINC01093
hsa-miR-708-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_039977.1
Biotype: lincRNA
Gene id: NR_039977.1 (gene)
Gene Name: LINC01093
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-676
0.048
3
6mer
1113-1136
0.006
3
TINCR
hsa-miR-708-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027064.1
Biotype: lincRNA
Gene id: NR_027064.1 (gene)
Gene Name: TINCR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-294
0.039
2
7mer
3471-3497
0.004
2
8mer
2639-2665
0.004
Not Conserved
6mer
3119-3137
0.003
1
6mer
2777-2804
0.002
1
7mer
1797-1821
0.001
1
RP11-495P10.8
hsa-miR-708-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-359
0.053
0
RP11-686D22.4
hsa-miR-708-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592117
Biotype: lincRNA
Gene id: ENSG00000267547
Gene Name: RP11-686D22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-43
0.028
0
7mer
443-459
0.024
0
XLOC_002043
hsa-miR-708-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004197
Biotype: transcript isomorph
Gene id: XLOC_002043
Gene Name: XLOC_002043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-95
0.052
0
XLOC_010706
hsa-miR-708-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3498-3524
0.038
1
6mer
3618-3645
0.014
1
LINC00294
hsa-miR-708-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_015451.1
Biotype: sense
Gene id: NR_015451.1 (gene)
Gene Name: LINC00294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2685-2708
0.047
0
6mer
263-283
0.004
1
6mer
1494-1509
0.001
1
RP11-579E24.2
hsa-miR-708-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522857
Biotype: lincRNA
Gene id: ENSG00000253762
Gene Name: RP11-579E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-317
0.038
0
7mer
48-61
0.013
3
AC114776.3
hsa-miR-708-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3096-3117
0.023
1
7mer
2743-2760
0.010
1
6mer
121-144
0.009
0
6mer
3911-3937
0.005
0
6mer
2569-2585
0.004
1
XLOC_010769
hsa-miR-708-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
152-170
0.016
1
6mer
2498-2516
0.015
1
6mer
2060-2080
0.011
1
6mer
1658-1682
0.009
1
XLOC_008993
hsa-miR-708-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018642
Biotype: transcript isomorph
Gene id: XLOC_008993
Gene Name: XLOC_008993
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-256
0.031
1
6mer
44-65
0.008
3
6mer
341-366
0.007
3
6mer
483-508
0.005
1
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