LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
RP11-104H15.10
hsa-miR-708-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575331
Biotype: processed_transcript
Gene id: ENSG00000272884
Gene Name: RP11-104H15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-245
0.013
7
8mer
2353-2373
0.011
8
8mer
2054-2073
0.010
9
6mer
487-499
0.005
5
8mer
3748-3764
0.004
0
8mer
1748-1757
0.004
1
6mer
729-754
0.003
6
6mer
36-52
0.003
2
6mer
2606-2632
0.002
5
6mer
4636-4645
0.002
1
6mer
1858-1882
0.001
1
6mer
1665-1682
0.001
0
6mer
2621-2642
0.001
5
RP11-27M9.1
hsa-miR-708-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558818
Biotype: lincRNA
Gene id: ENSG00000259390
Gene Name: RP11-27M9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-153
0.050
5
7mer
216-232
0.009
1
GJA9-MYCBP
hsa-miR-708-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037633.1
Biotype: sense
Gene id: NR_037633.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-120
0.057
1
6mer
3751-3768
0.001
1
6mer
3611-3630
0.001
4
GJA9-MYCBP
hsa-miR-708-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037635.1
Biotype: sense
Gene id: NR_037635.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-120
0.059
1
GJA9-MYCBP
hsa-miR-708-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037637.1
Biotype: sense
Gene id: NR_037637.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-120
0.059
1
RP11-504P24.8
hsa-miR-708-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608760
Biotype: lincRNA
Gene id: ENSG00000272645
Gene Name: RP11-504P24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-221
0.017
0
7mer
1809-1829
0.016
1
7mer
423-441
0.010
1
7mer
901-923
0.006
0
8mer
455-471
0.006
Not Conserved
7mer
710-728
0.004
0
RP11-138B4.1
hsa-miR-708-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511385
Biotype: lincRNA
Gene id: ENSG00000250658
Gene Name: RP11-138B4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-170
0.055
1
6mer
1829-1844
0.003
2
GJA9-MYCBP
hsa-miR-708-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037636.1
Biotype: sense
Gene id: NR_037636.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-120
0.058
1
RP11-13K12.1
hsa-miR-708-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591283
Biotype: lincRNA
Gene id: ENSG00000267506
Gene Name: RP11-13K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4815-4830
0.017
0
8mer
2727-2744
0.006
0
6mer
4603-4627
0.003
1
6mer
4490-4511
0.003
1
7mer
1988-2009
0.003
0
6mer
4424-4448
0.002
Not Conserved
6mer
743-747
0.002
Not Conserved
7mer
1772-1787
0.002
2
6mer
4540-4564
0.002
Not Conserved
6mer
2317-2325
0.002
1
6mer
4325-4342
0.002
0
6mer
4053-4077
0.001
0
6mer
1426-1441
0.001
1
6mer
4212-4236
0.001
Not Conserved
6mer
1554-1576
0.001
1
6mer
4106-4130
0.001
0
6mer
3894-3918
0.001
Not Conserved
6mer
3523-3547
0.001
Not Conserved
6mer
3947-3971
0.001
Not Conserved
6mer
3689-3706
0.001
Not Conserved
6mer
2887-2911
0.001
Not Conserved
6mer
3738-3759
0.001
Not Conserved
6mer
3000-3017
0.001
Not Conserved
6mer
3318-3335
0.001
Not Conserved
6mer
3152-3176
0.001
Not Conserved
6mer
3205-3229
0.000
0
6mer
3576-3600
0.000
Not Conserved
6mer
3053-3070
0.000
Not Conserved
6mer
3371-3388
0.000
Not Conserved
GJA9-MYCBP
hsa-miR-708-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037634.1
Biotype: sense
Gene id: NR_037634.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-120
0.057
1
6mer
2883-2900
0.001
1
RP11-27M9.1
hsa-miR-708-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559570
Biotype: lincRNA
Gene id: ENSG00000259390
Gene Name: RP11-27M9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-75
0.049
5
7mer
138-154
0.009
1
XLOC_004209
hsa-miR-708-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008695
Biotype: transcript isomorph
Gene id: XLOC_004209
Gene Name: XLOC_004209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
773-799
0.044
3
8mer
1643-1660
0.006
0
7mer
2135-2156
0.003
0
6mer
2298-2315
0.002
Not Conserved
6mer
1236-1259
0.002
3
XLOC_013552
hsa-miR-708-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028202
Biotype: transcript isomorph
Gene id: XLOC_013552
Gene Name: XLOC_013552
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-342
0.004
0
7mer
220-238
0.003
0
7mer
538-553
0.003
0
6mer
379-394
0.002
0
6mer
486-500
0.002
0
7mer
2350-2365
0.002
Not Conserved
8mer
4943-4959
0.002
0
7mer
1116-1131
0.002
0
6mer
6034-6060
0.002
3
7mer
1731-1746
0.002
1
7mer
1480-1495
0.002
1
6mer
589-604
0.001
0
6mer
746-761
0.001
0
7mer
2719-2734
0.001
Not Conserved
8mer
4220-4242
0.001
0
7mer
3033-3048
0.001
Not Conserved
6mer
3501-3527
0.001
0
8mer
2561-2576
0.001
Not Conserved
6mer
2089-2101
0.001
0
7mer
4834-4852
0.001
Not Conserved
7mer
3247-3262
0.001
Not Conserved
6mer
1325-1337
0.001
1
6mer
3866-3881
0.001
0
6mer
5207-5222
0.001
0
7mer
4335-4347
0.001
0
6mer
799-814
0.001
0
7mer
1533-1548
0.001
1
6mer
852-867
0.001
0
6mer
905-920
0.001
0
6mer
4124-4136
0.001
0
7mer
2613-2628
0.001
Not Conserved
6mer
961-973
0.001
0
6mer
4650-4665
0.001
Not Conserved
7mer
4664-4684
0.001
Not Conserved
6mer
1832-1846
0.001
1
6mer
3551-3568
0.001
1
6mer
1375-1390
0.001
0
6mer
4388-4400
0.001
0
6mer
1878-1893
0.001
1
6mer
2775-2787
0.000
Not Conserved
6mer
3917-3932
0.000
0
6mer
3970-3984
0.000
0
6mer
1124-1135
0.000
0
6mer
2823-2838
0.000
Not Conserved
6mer
2876-2890
0.000
Not Conserved
6mer
5257-5272
0.000
0
6mer
1541-1552
0.000
0
XLOC_010671
hsa-miR-708-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022066
Biotype: transcript isomorph
Gene id: XLOC_010671
Gene Name: XLOC_010671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-354
0.057
0
XLOC_013549
hsa-miR-708-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028198
Biotype: transcript isomorph
Gene id: XLOC_013549
Gene Name: XLOC_013549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1883-1899
0.007
0
8mer
1989-2008
0.005
Not Conserved
7mer
563-589
0.005
Not Conserved
6mer
1820-1845
0.004
0
6mer
2146-2165
0.004
0
6mer
1722-1747
0.004
0
6mer
1624-1649
0.003
0
6mer
266-292
0.003
0
6mer
1337-1359
0.003
0
6mer
1144-1166
0.002
0
6mer
1771-1797
0.002
Not Conserved
6mer
614-636
0.002
Not Conserved
6mer
1531-1551
0.002
Not Conserved
6mer
856-878
0.002
Not Conserved
6mer
468-483
0.002
Not Conserved
6mer
709-734
0.002
Not Conserved
6mer
951-973
0.001
Not Conserved
6mer
1432-1457
0.001
Not Conserved
6mer
1239-1264
0.001
Not Conserved
6mer
476-487
0.001
Not Conserved
6mer
1046-1071
0.001
Not Conserved
TINCR
hsa-miR-708-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000448587
Biotype: lincRNA
Gene id: ENSG00000223573
Gene Name: TINCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-294
0.042
2
7mer
3471-3497
0.004
2
8mer
2639-2665
0.004
Not Conserved
6mer
3119-3137
0.003
1
6mer
2777-2804
0.002
1
7mer
1797-1821
0.001
1
UCA1
hsa-miR-708-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397381
Biotype: lincRNA
Gene id: ENSG00000214049
Gene Name: UCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
742-753
0.040
1
6mer
248-273
0.013
1
6mer
773-795
0.003
0
RP4-669L17.10
hsa-miR-708-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4024-4039
0.013
0
7mer
3772-3794
0.007
1
6mer
208-231
0.004
0
7mer
404-422
0.004
0
7mer
499-517
0.003
0
7mer
4054-4071
0.003
0
8mer
1810-1826
0.003
Not Conserved
7mer
3379-3405
0.003
0
7mer
986-1000
0.003
0
8mer
1561-1577
0.002
Not Conserved
7mer
2169-2183
0.002
0
7mer
3490-3504
0.002
0
7mer
657-678
0.002
Not Conserved
7mer
2561-2580
0.002
0
7mer
1334-1359
0.002
Not Conserved
6mer
3541-3557
0.001
0
7mer
1591-1609
0.001
0
6mer
2644-2663
0.001
0
6mer
2219-2235
0.000
Not Conserved
XLOC_009222
hsa-miR-708-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
432-448
0.014
0
6mer
5271-5296
0.009
0
6mer
4885-4900
0.009
0
6mer
1674-1696
0.006
0
6mer
2110-2127
0.006
0
6mer
3383-3403
0.006
0
6mer
3705-3726
0.005
0
MCM3AP-AS1
hsa-miR-708-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444998
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2005-2020
0.023
5
8mer
64-78
0.013
1
7mer
47-64
0.013
4
6mer
109-134
0.003
1
6mer
1310-1330
0.002
1
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