LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-708-5p


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Gene
miRNA
Score
DIANA Links
XLOC_005210
hsa-miR-708-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012441
Biotype: transcript isomorph
Gene id: XLOC_005210
Gene Name: XLOC_005210
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1010-1030
0.041
1
8mer
283-301
0.035
2
6mer
1044-1070
0.005
0
RP11-266K4.13
hsa-miR-708-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-211
0.080
1
RP5-1025A1.3
hsa-miR-708-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613001
Biotype: lincRNA
Gene id: ENSG00000275358
Gene Name: RP5-1025A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
455-470
0.067
1
7mer
128-150
0.006
Not Conserved
6mer
47-70
0.006
1
CTB-176F20.3
hsa-miR-708-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-43
0.010
0
6mer
116-139
0.010
0
6mer
189-213
0.010
0
6mer
87-107
0.008
0
6mer
101-122
0.008
0
6mer
72-84
0.008
0
6mer
332-356
0.007
0
6mer
256-283
0.007
0
6mer
393-406
0.006
0
FAM201A
hsa-miR-708-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000471864
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
657-676
0.052
1
6mer
644-659
0.011
1
7mer
235-252
0.005
0
6mer
496-512
0.005
0
CTD-3105H18.13
hsa-miR-708-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1465-1479
0.072
1
CTC-559E9.4
hsa-miR-708-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590274
Biotype: lincRNA
Gene id: ENSG00000267581
Gene Name: CTC-559E9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
582-606
0.057
0
8mer
392-413
0.015
Not Conserved
RP11-212I21.2
hsa-miR-708-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569037
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-218
0.072
12
XLOC_013420
hsa-miR-708-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027431
Biotype: transcript isomorph
Gene id: XLOC_013420
Gene Name: XLOC_013420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-145
0.071
0
LINC00664
hsa-miR-708-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-574
0.040
1
6mer
120-147
0.017
1
6mer
260-283
0.009
0
6mer
472-499
0.005
0
XLOC_000822
hsa-miR-708-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001484
Biotype: transcript isomorph
Gene id: XLOC_000822
Gene Name: XLOC_000822
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1301-1327
0.056
1
7mer
1214-1232
0.015
3
RP11-84C10.2
hsa-miR-708-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555624
Biotype: lincRNA
Gene id: ENSG00000136315
Gene Name: RP11-84C10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-164
0.044
1
8mer
188-204
0.026
0
XLOC_013771
hsa-miR-708-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028418
Biotype: transcript isomorph
Gene id: XLOC_013771
Gene Name: XLOC_013771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-105
0.008
1
8mer
308-327
0.008
0
7mer
98-113
0.006
1
6mer
610-635
0.005
1
6mer
901-926
0.003
1
6mer
151-170
0.003
1
6mer
512-537
0.003
0
6mer
803-828
0.003
1
6mer
414-439
0.002
0
6mer
203-229
0.002
0
7mer
4160-4175
0.002
0
7mer
4213-4231
0.002
0
6mer
1195-1220
0.002
1
7mer
3064-3079
0.001
Not Conserved
7mer
1729-1755
0.001
Not Conserved
7mer
1985-2000
0.001
Not Conserved
7mer
3999-4017
0.001
Not Conserved
6mer
1391-1414
0.001
0
6mer
1097-1122
0.001
Not Conserved
6mer
1293-1318
0.001
0
7mer
2200-2224
0.001
Not Conserved
6mer
3732-3744
0.001
Not Conserved
7mer
2339-2365
0.001
Not Conserved
6mer
1489-1514
0.001
0
7mer
3623-3641
0.001
Not Conserved
6mer
1587-1612
0.001
0
6mer
3378-3393
0.001
Not Conserved
7mer
2833-2849
0.001
Not Conserved
7mer
3225-3249
0.001
Not Conserved
6mer
4108-4123
0.001
Not Conserved
6mer
2958-2970
0.001
Not Conserved
6mer
2445-2460
0.001
Not Conserved
6mer
1685-1697
0.001
Not Conserved
6mer
2852-2864
0.000
Not Conserved
6mer
3326-3341
0.000
Not Conserved
6mer
3060-3071
0.000
Not Conserved
6mer
3728-3739
0.000
Not Conserved
RP11-69H14.6
hsa-miR-708-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564932
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-412
0.070
Not Conserved
XLOC_011161
hsa-miR-708-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023212
Biotype: transcript isomorph
Gene id: XLOC_011161
Gene Name: XLOC_011161
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-412
0.070
Not Conserved
LINC01193
hsa-miR-708-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554209
Biotype: lincRNA
Gene id: ENSG00000258710
Gene Name: LINC01193
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-412
0.070
Not Conserved
LOC100506639
hsa-miR-708-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1204-1230
0.060
1
6mer
444-471
0.010
1
RP3-340N1.2
hsa-miR-708-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417884
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1037-1054
0.066
1
6mer
103-123
0.002
Not Conserved
NR2F2-AS1
hsa-miR-708-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557863
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-220
0.053
6
7mer
476-503
0.008
1
7mer
139-161
0.007
4
LL22NC03-86G7.1
hsa-miR-708-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-708-5p
Sequence: aaggagcuuacaaucuagcuggg
MirBase ID: MIMAT0004926
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9612-9624
0.013
2
9mer
14240-14261
0.005
1
8mer
18813-18834
0.005
5
8mer
17881-17898
0.004
1
7mer
17482-17499
0.004
9
7mer
30445-30465
0.003
8
8mer
23183-23203
0.003
Not Conserved
7mer
1087-1107
0.003
1
7mer
13593-13611
0.003
0
7mer
22238-22254
0.002
1
6mer
10332-10354
0.002
1
6mer
31980-32001
0.001
0
6mer
7350-7369
0.001
0
7mer
15530-15555
0.001
1
6mer
5198-5218
0.001
1
6mer
23741-23764
0.001
0
7mer
20334-20359
0.001
1
6mer
35541-35557
0.001
2
6mer
16117-16142
0.001
1
6mer
26635-26655
0.001
1
6mer
4260-4282
0.001
1
6mer
15915-15935
0.001
1
6mer
32096-32122
0.001
4
6mer
10390-10415
0.001
1
6mer
34790-34811
0.001
2
6mer
12792-12813
0.001
1
6mer
20234-20248
0.001
0
6mer
9215-9232
0.001
0
6mer
21506-21528
0.001
1
6mer
10437-10464
0.001
1
6mer
17953-17973
0.000
1
6mer
10458-10483
0.000
1
6mer
10396-10419
0.000
1
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