LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
ZNF561-AS1
hsa-miR-520h
0.969
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592851
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-88
0.067
1
ZNF561-AS1
hsa-miR-520h
0.969
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616951
Biotype: processed_transcript
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-82
0.067
1
TTTY15
hsa-miR-520h
0.968
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
99-113
0.020
0
8mer
2960-2977
0.020
0
6mer
2633-2651
0.007
0
6mer
1773-1789
0.007
0
6mer
2302-2327
0.007
0
6mer
1816-1840
0.003
0
6mer
3631-3654
0.002
Not Conserved
XLOC_008295
hsa-miR-520h
0.968
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
99-113
0.020
0
8mer
2960-2977
0.020
0
6mer
2633-2651
0.007
0
6mer
1773-1789
0.007
0
6mer
2302-2327
0.007
0
6mer
1816-1840
0.003
0
6mer
3631-3654
0.002
Not Conserved
XLOC_012131
hsa-miR-520h
0.966
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025324
Biotype: transcript isomorph
Gene id: XLOC_012131
Gene Name: XLOC_012131
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-229
0.066
0
LCMT1-AS2
hsa-miR-520h
0.966
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1035-1052
0.031
1
7mer
2073-2085
0.010
1
6mer
3978-4000
0.007
1
6mer
1732-1756
0.007
1
6mer
1553-1571
0.006
1
6mer
3156-3177
0.003
0
6mer
3827-3844
0.002
0
XLOC_009222
hsa-miR-520h
0.965
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4162-4179
0.023
0
6mer
278-289
0.017
0
6mer
3300-3326
0.008
0
6mer
2297-2308
0.007
0
6mer
3816-3830
0.007
0
6mer
5115-5133
0.002
Not Conserved
6mer
1761-1784
0.001
Not Conserved
CTC-260E6.6
hsa-miR-520h
0.964
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592022
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-597
0.046
1
6mer
64-75
0.018
1
XLOC_009043
hsa-miR-520h
0.964
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-161
0.065
0
LINC00664
hsa-miR-520h
0.964
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-415
0.043
1
8mer
1050-1067
0.011
0
7mer
1353-1370
0.011
0
RP11-789C2.1
hsa-miR-520h
0.960
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000420721
Biotype: lincRNA
Gene id: ENSG00000251598
Gene Name: RP11-789C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-408
0.063
1
LOC100129917
hsa-miR-520h
0.960
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036512.1
Biotype: lincRNA
Gene id: NR_036512.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-321
0.062
1
RP11-440L14.1
hsa-miR-520h
0.959
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503185
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-321
0.062
1
LOC100129917
hsa-miR-520h
0.959
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036511.1
Biotype: lincRNA
Gene id: NR_036511.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-321
0.062
1
RP11-327L9.1
hsa-miR-520h
0.958
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622930
Biotype: lincRNA
Gene id: ENSG00000280366
Gene Name: RP11-327L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-399
0.049
7
6mer
355-378
0.013
8
RP11-96K19.4
hsa-miR-520h
0.958
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3666-3691
0.031
1
6mer
820-836
0.012
1
6mer
1686-1708
0.007
1
7mer
3467-3481
0.005
0
6mer
4630-4651
0.003
0
6mer
1874-1891
0.003
0
CTB-25B13.5
hsa-miR-520h
0.957
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594262
Biotype: lincRNA
Gene id: ENSG00000268798
Gene Name: CTB-25B13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
853-874
0.051
1
6mer
238-250
0.006
0
6mer
470-484
0.005
0
XLOC_004128
hsa-miR-520h
0.954
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007884
Biotype: transcript isomorph
Gene id: XLOC_004128
Gene Name: XLOC_004128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
226-242
0.027
0
7mer
164-183
0.018
0
6mer
195-214
0.016
0
RP11-352B15.2
hsa-miR-520h
0.954
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-468
0.017
0
6mer
154-171
0.017
0
6mer
118-135
0.015
0
6mer
620-639
0.011
0
XLOC_007446
hsa-miR-520h
0.954
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016056
Biotype: transcript isomorph
Gene id: XLOC_007446
Gene Name: XLOC_007446
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-233
0.060
1
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