LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519d-3p


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Gene
miRNA
Score
DIANA Links
AC012506.3
hsa-miR-519d-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426527
Biotype: lincRNA
Gene id: ENSG00000223634
Gene Name: AC012506.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-420
0.045
1
XLOC_007035
hsa-miR-519d-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-705
0.010
Not Conserved
8mer
6332-6347
0.007
Not Conserved
8mer
3870-3890
0.006
1
8mer
10199-10219
0.005
0
8mer
11003-11023
0.004
0
8mer
9366-9386
0.003
0
8mer
6956-6978
0.003
0
6mer
6063-6084
0.003
2
7mer
14052-14073
0.002
0
6mer
8213-8239
0.002
1
AGAP11
hsa-miR-519d-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-181
0.034
1
6mer
2461-2488
0.004
1
6mer
988-1009
0.003
1
6mer
1241-1266
0.002
0
7mer
1961-1982
0.001
Not Conserved
RP11-626G11.5
hsa-miR-519d-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568971
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-128
0.044
4
RP11-626G11.5
hsa-miR-519d-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567047
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-128
0.044
4
RP4-565E6.1
hsa-miR-519d-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000496508
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2346-2366
0.008
3
7mer
564-576
0.008
5
6mer
616-632
0.007
4
6mer
184-195
0.007
3
6mer
844-858
0.005
1
6mer
1634-1656
0.004
3
6mer
1526-1546
0.003
2
7mer
1618-1638
0.002
Not Conserved
RP11-34P13.13
hsa-miR-519d-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-108
0.023
0
6mer
3887-3906
0.014
1
6mer
3814-3821
0.007
1
RP11-108M12.3
hsa-miR-519d-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554160
Biotype: lincRNA
Gene id: ENSG00000258592
Gene Name: RP11-108M12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-251
0.033
5
7mer
684-704
0.011
4
XLOC_006964
hsa-miR-519d-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014550
Biotype: transcript isomorph
Gene id: XLOC_006964
Gene Name: XLOC_006964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-274
0.044
1
RP3-467K16.4
hsa-miR-519d-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427824
Biotype: lincRNA
Gene id: ENSG00000228140
Gene Name: RP3-467K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4220-4226
0.017
3
7mer
4017-4037
0.014
5
7mer
4638-4655
0.010
1
6mer
4523-4546
0.003
3
XLOC_001716
hsa-miR-519d-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003910
Biotype: transcript isomorph
Gene id: XLOC_001716
Gene Name: XLOC_001716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
576-592
0.028
2
7mer
144-162
0.016
0
RP11-178C3.2
hsa-miR-519d-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586209
Biotype: lincRNA
Gene id: ENSG00000267302
Gene Name: RP11-178C3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-291
0.029
5
7mer
716-738
0.006
3
6mer
566-586
0.006
7
6mer
484-511
0.003
0
CTA-228A9.4
hsa-miR-519d-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4455-4477
0.006
1
7mer
17031-17046
0.006
1
8mer
10028-10050
0.004
1
6mer
16342-16363
0.003
3
8mer
6111-6131
0.003
1
8mer
1611-1631
0.003
1
6mer
1202-1222
0.003
2
8mer
10715-10735
0.003
1
8mer
4084-4104
0.003
0
7mer
19465-19485
0.002
0
7mer
5572-5592
0.002
1
6mer
18131-18150
0.001
1
6mer
6593-6614
0.001
1
9mer
14152-14172
0.001
Not Conserved
6mer
18434-18446
0.001
1
6mer
11156-11180
0.001
0
LINC01426
hsa-miR-519d-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420877
Biotype: antisense
Gene id: ENSG00000234380
Gene Name: LINC01426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-768
0.009
1
8mer
1685-1702
0.008
1
6mer
2222-2227
0.005
2
6mer
126-149
0.005
0
7mer
2355-2375
0.005
1
8mer
1605-1628
0.003
0
6mer
1923-1944
0.003
1
6mer
1904-1928
0.003
0
6mer
1459-1483
0.002
1
PVRL3-AS1
hsa-miR-519d-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467426
Biotype: antisense
Gene id: ENSG00000242242
Gene Name: PVRL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
603-619
0.043
6
XLOC_007290
hsa-miR-519d-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015925
Biotype: transcript isomorph
Gene id: XLOC_007290
Gene Name: XLOC_007290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1417-1431
0.037
5
6mer
1159-1185
0.006
3
CKMT2-AS1
hsa-miR-519d-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501927
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-214
0.024
1
8mer
586-600
0.016
0
6mer
1921-1940
0.003
1
SIK3-IT1
hsa-miR-519d-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000454832
Biotype: sense_intronic
Gene id: ENSG00000231865
Gene Name: SIK3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-355
0.043
7
LOC101926935
hsa-miR-519d-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6252-6272
0.027
0
7mer
1227-1236
0.006
Not Conserved
6mer
4516-4530
0.006
0
7mer
332-348
0.004
Not Conserved
CTC-260E6.6
hsa-miR-519d-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592022
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-597
0.043
1
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