LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519d-3p


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Gene
miRNA
Score
DIANA Links
CTC-369A16.3
hsa-miR-519d-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510853
Biotype: lincRNA
Gene id: ENSG00000251662
Gene Name: CTC-369A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-116
0.040
5
6mer
555-565
0.007
1
SGMS1-AS1
hsa-miR-519d-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11909-11929
0.010
0
7mer
4108-4119
0.006
0
7mer
1759-1778
0.005
1
6mer
12290-12312
0.005
1
7mer
1119-1136
0.005
1
8mer
2320-2340
0.003
0
6mer
8147-8163
0.003
3
6mer
1098-1123
0.002
1
6mer
11094-11120
0.002
1
7mer
3180-3185
0.002
1
6mer
8981-9006
0.002
1
6mer
10025-10044
0.001
1
AC008268.1
hsa-miR-519d-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425887
Biotype: lincRNA
Gene id: ENSG00000235584
Gene Name: AC008268.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
631-655
0.019
1
7mer
1056-1073
0.014
2
6mer
961-975
0.007
2
6mer
769-785
0.006
4
XLOC_007279
hsa-miR-519d-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4359-4372
0.015
0
8mer
3645-3660
0.008
1
8mer
1536-1552
0.008
1
6mer
5164-5189
0.007
2
6mer
895-900
0.003
0
6mer
2681-2698
0.002
1
6mer
3953-3974
0.001
Not Conserved
CTC-273B12.5
hsa-miR-519d-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600529
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-57
0.046
Not Conserved
CTB-89H12.4
hsa-miR-519d-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
560-577
0.022
10
6mer
535-558
0.009
10
6mer
143-167
0.007
6
8mer
6992-7012
0.005
1
6mer
7304-7320
0.002
0
7mer
3779-3799
0.001
0
LCMT1-AS2
hsa-miR-519d-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1035-1057
0.026
1
6mer
2074-2086
0.007
1
6mer
1732-1751
0.007
1
6mer
3978-4001
0.006
1
RP11-162A12.4
hsa-miR-519d-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622010
Biotype: lincRNA
Gene id: ENSG00000278107
Gene Name: RP11-162A12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-213
0.034
1
7mer
142-158
0.012
0
RP11-757G1.6
hsa-miR-519d-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2811-2831
0.024
0
6mer
904-927
0.008
0
6mer
1679-1694
0.007
0
6mer
1259-1271
0.006
0
RP11-532N4.2
hsa-miR-519d-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418467
Biotype: antisense
Gene id: ENSG00000235535
Gene Name: RP11-532N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-615
0.040
1
6mer
74-95
0.005
2
LINC00846
hsa-miR-519d-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-302
0.045
1
RP4-646N3.1
hsa-miR-519d-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000432359
Biotype: lincRNA
Gene id: ENSG00000235806
Gene Name: RP4-646N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-152
0.045
7
LL22NC03-22D1.1
hsa-miR-519d-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
104-123
0.007
3
8mer
3879-3898
0.003
1
6mer
13360-13385
0.003
5
6mer
18737-18754
0.003
2
6mer
15397-15412
0.003
1
6mer
4584-4598
0.002
1
7mer
17702-17723
0.002
0
6mer
13862-13879
0.002
2
6mer
7759-7779
0.002
1
6mer
18516-18537
0.002
1
6mer
11357-11374
0.002
2
6mer
17111-17132
0.002
1
6mer
2481-2497
0.002
0
6mer
9986-10013
0.002
0
6mer
17231-17250
0.001
0
6mer
8464-8473
0.001
Not Conserved
6mer
1348-1363
0.001
0
6mer
11003-11023
0.001
0
6mer
23957-23970
0.001
0
6mer
27136-27162
0.001
Not Conserved
6mer
18789-18801
0.001
0
RP1-137K2.2
hsa-miR-519d-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442936
Biotype: antisense
Gene id: ENSG00000233044
Gene Name: RP1-137K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-38
0.040
1
6mer
34-53
0.005
0
RP5-1014D13.2
hsa-miR-519d-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5035-5045
0.007
0
7mer
6194-6213
0.006
1
8mer
10157-10179
0.003
0
8mer
7504-7524
0.003
0
8mer
11198-11220
0.003
0
8mer
7171-7192
0.003
0
8mer
6591-6613
0.003
0
8mer
5897-5917
0.003
0
8mer
3089-3111
0.002
0
7mer
6887-6907
0.002
Not Conserved
7mer
4522-4548
0.002
1
6mer
8181-8206
0.002
1
7mer
9511-9532
0.002
0
7mer
9781-9801
0.002
0
6mer
12236-12259
0.001
1
6mer
16103-16118
0.001
0
7mer
6264-6284
0.001
0
XLOC_012630
hsa-miR-519d-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1360-1382
0.011
0
6mer
1945-1968
0.009
0
6mer
498-513
0.008
0
6mer
84-110
0.007
0
6mer
810-829
0.006
0
6mer
1002-1010
0.002
Not Conserved
6mer
1006-1024
0.002
0
RP5-963E22.5
hsa-miR-519d-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000567259
Biotype: lincRNA
Gene id: ENSG00000260416
Gene Name: RP5-963E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-88
0.022
1
7mer
84-102
0.015
1
7mer
1489-1502
0.005
0
6mer
1396-1423
0.003
Not Conserved
XLOC_010290
hsa-miR-519d-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-121
0.045
0
LINC00421
hsa-miR-519d-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-121
0.045
0
AP000330.8
hsa-miR-519d-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
673-700
0.010
1
8mer
1617-1634
0.008
1
6mer
2154-2159
0.006
2
6mer
58-81
0.005
0
7mer
2287-2307
0.005
1
8mer
1537-1560
0.003
0
6mer
1855-1876
0.003
1
6mer
1836-1860
0.003
0
6mer
1391-1415
0.002
1
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