LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519d-3p


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Gene
miRNA
Score
DIANA Links
XLOC_004804
hsa-miR-519d-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010322
Biotype: transcript isomorph
Gene id: XLOC_004804
Gene Name: XLOC_004804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-275
0.023
1
8mer
3020-3043
0.010
1
8mer
937-957
0.009
0
8mer
1802-1822
0.005
0
6mer
3135-3150
0.002
0
HAND2-AS1
hsa-miR-519d-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2397-2416
0.025
7
6mer
2117-2137
0.010
6
6mer
2200-2216
0.005
4
6mer
2379-2395
0.005
Not Conserved
6mer
244-262
0.003
1
XLOC_005477
hsa-miR-519d-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012606
Biotype: transcript isomorph
Gene id: XLOC_005477
Gene Name: XLOC_005477
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-39
0.035
1
8mer
137-157
0.014
1
PWARSN
hsa-miR-519d-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-177
0.023
2
6mer
115-141
0.012
3
8mer
1538-1556
0.009
0
9mer
1138-1156
0.005
0
RP11-111F5.3
hsa-miR-519d-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448491
Biotype: lincRNA
Gene id: ENSG00000231212
Gene Name: RP11-111F5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
451-463
0.027
1
6mer
459-475
0.021
1
RP11-361F15.2
hsa-miR-519d-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1089-1107
0.018
4
7mer
155-173
0.012
1
6mer
1232-1253
0.011
8
6mer
736-748
0.005
5
6mer
924-928
0.003
1
CTC-273B12.5
hsa-miR-519d-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593476
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-39
0.048
Not Conserved
RP11-65D24.2
hsa-miR-519d-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000375713
Biotype: lincRNA
Gene id: ENSG00000204398
Gene Name: RP11-65D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-401
0.048
1
RP11-1151B14.1
hsa-miR-519d-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622635
Biotype: lincRNA
Gene id: ENSG00000276403
Gene Name: RP11-1151B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1234-1259
0.025
1
7mer
607-633
0.018
2
7mer
456-482
0.005
1
LINC01517
hsa-miR-519d-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
289-294
0.030
0
6mer
108-120
0.018
0
RP11-573D15.3
hsa-miR-519d-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000434957
Biotype: antisense
Gene id: ENSG00000231724
Gene Name: RP11-573D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-263
0.033
3
8mer
168-190
0.015
1
RP11-77A13.1
hsa-miR-519d-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000556770
Biotype: antisense
Gene id: ENSG00000259094
Gene Name: RP11-77A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-19
0.030
Not Conserved
8mer
200-217
0.016
Not Conserved
6mer
654-673
0.003
Not Conserved
RP11-614F17.2
hsa-miR-519d-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507933
Biotype: lincRNA
Gene id: ENSG00000251676
Gene Name: RP11-614F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
34-46
0.026
1
6mer
22-38
0.022
1
HAND2-AS1
hsa-miR-519d-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2394-2413
0.023
7
6mer
2114-2134
0.010
6
6mer
2197-2213
0.005
4
6mer
2376-2392
0.005
Not Conserved
6mer
241-259
0.003
1
RP11-887P2.5
hsa-miR-519d-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-65
0.026
2
7mer
1263-1277
0.008
2
7mer
1446-1466
0.005
1
7mer
579-603
0.005
1
6mer
1021-1029
0.004
0
CTC-273B12.5
hsa-miR-519d-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596497
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-42
0.047
Not Conserved
C10orf40
hsa-miR-519d-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000521074
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-440
0.030
0
7mer
1468-1479
0.009
0
8mer
1026-1046
0.004
0
8mer
2088-2108
0.004
0
BCYRN1
hsa-miR-519d-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
302-322
0.016
1
7mer
926-947
0.006
1
7mer
12734-12751
0.005
1
6mer
318-343
0.005
0
8mer
11241-11261
0.004
1
8mer
2693-2715
0.003
0
7mer
6250-6271
0.002
1
6mer
8967-8987
0.002
1
7mer
7918-7940
0.002
0
6mer
5713-5739
0.002
1
RP11-410C4.5
hsa-miR-519d-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563417
Biotype: lincRNA
Gene id: ENSG00000260505
Gene Name: RP11-410C4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2391-2408
0.027
1
6mer
2678-2694
0.005
1
6mer
843-852
0.005
1
6mer
1151-1162
0.004
1
6mer
1934-1953
0.003
1
6mer
1956-1982
0.002
0
RP3-412A9.17
hsa-miR-519d-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1767-1789
0.007
1
8mer
398-418
0.007
0
8mer
16275-16297
0.006
Not Conserved
7mer
13463-13483
0.004
1
7mer
8692-8711
0.004
1
7mer
12848-12853
0.004
1
8mer
9788-9808
0.003
0
7mer
10063-10072
0.003
0
8mer
4750-4772
0.003
0
7mer
883-903
0.003
0
6mer
15025-15040
0.002
1
7mer
2534-2559
0.002
0
8mer
11953-11972
0.001
0
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