LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519d-3p


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Gene
miRNA
Score
DIANA Links
LINC00293
hsa-miR-519d-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
803-829
0.043
1
8mer
533-554
0.038
0
XLOC_012755
hsa-miR-519d-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026408
Biotype: transcript isomorph
Gene id: XLOC_012755
Gene Name: XLOC_012755
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-57
0.061
0
6mer
284-301
0.018
0
TTN-AS1
hsa-miR-519d-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589487
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
839-860
0.038
8
8mer
493-500
0.036
6
6mer
775-797
0.005
2
XLOC_001668
hsa-miR-519d-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5157-5179
0.042
1
8mer
5636-5656
0.018
0
6mer
2397-2407
0.008
1
6mer
3687-3710
0.006
1
6mer
3140-3161
0.003
0
HOTAIRM1
hsa-miR-519d-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428939
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
728-747
0.068
8
6mer
743-760
0.008
7
TTTY15
hsa-miR-519d-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2926-2944
0.021
0
6mer
60-80
0.018
0
6mer
3148-3157
0.011
0
6mer
1095-1108
0.011
0
7mer
4001-4019
0.008
0
6mer
3943-3963
0.006
0
RP11-363E7.4
hsa-miR-519d-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563205
Biotype: sense_overlapping
Gene id: ENSG00000260912
Gene Name: RP11-363E7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1723-1748
0.070
8
6mer
92-115
0.005
1
HOTAIRM1
hsa-miR-519d-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434063
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-514
0.066
8
6mer
510-527
0.008
7
ZNF561-AS1
hsa-miR-519d-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
894-913
0.031
0
6mer
2327-2346
0.023
0
7mer
335-355
0.019
0
XLOC_008295
hsa-miR-519d-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2959-2977
0.021
0
6mer
93-113
0.017
0
6mer
3181-3190
0.011
0
6mer
1128-1141
0.011
0
7mer
4034-4052
0.008
0
6mer
3976-3996
0.006
0
TTTY15
hsa-miR-519d-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2959-2977
0.021
0
6mer
93-113
0.017
0
6mer
3181-3190
0.011
0
6mer
1128-1141
0.011
0
7mer
4034-4052
0.007
0
6mer
3976-3996
0.006
0
XLOC_001576
hsa-miR-519d-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004852
Biotype: transcript isomorph
Gene id: XLOC_001576
Gene Name: XLOC_001576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
20-46
0.072
1
RP11-707F2.1
hsa-miR-519d-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505781
Biotype: lincRNA
Gene id: ENSG00000250905
Gene Name: RP11-707F2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-449
0.072
7
XLOC_012997
hsa-miR-519d-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
742-762
0.035
1
6mer
582-586
0.013
1
6mer
463-488
0.012
1
8mer
1724-1736
0.011
Not Conserved
AC006548.28
hsa-miR-519d-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
326-348
0.006
1
8mer
63298-63322
0.005
1
6mer
112-122
0.004
1
7mer
2339-2361
0.004
0
7mer
59328-59342
0.003
1
8mer
81628-81646
0.003
1
7mer
2177-2197
0.003
1
8mer
66882-66902
0.003
Not Conserved
8mer
41577-41589
0.003
0
7mer
71556-71569
0.003
Not Conserved
6mer
28257-28283
0.002
0
6mer
36097-36112
0.002
4
7mer
24819-24845
0.002
0
7mer
51927-51944
0.002
Not Conserved
6mer
16543-16554
0.002
1
6mer
15921-15943
0.002
3
6mer
73712-73739
0.002
1
6mer
41050-41064
0.002
1
6mer
59469-59483
0.002
1
6mer
72927-72948
0.002
0
6mer
55343-55364
0.001
0
6mer
67658-67682
0.001
0
6mer
68803-68826
0.001
0
6mer
16952-16974
0.001
0
6mer
55725-55738
0.001
0
6mer
51565-51588
0.001
Not Conserved
7mer
75137-75164
0.001
0
7mer
36841-36859
0.001
1
6mer
23289-23310
0.001
1
6mer
38121-38137
0.001
1
6mer
12105-12125
0.001
1
6mer
35981-36002
0.001
1
CTC-265F19.1
hsa-miR-519d-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587894
Biotype: sense_intronic
Gene id: ENSG00000267749
Gene Name: CTC-265F19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-110
0.019
0
8mer
917-937
0.017
0
6mer
1526-1542
0.010
1
6mer
1399-1415
0.008
1
6mer
1335-1352
0.007
1
6mer
1653-1669
0.005
0
6mer
1207-1222
0.003
0
6mer
1143-1158
0.002
0
RP11-57A19.5
hsa-miR-519d-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602838
Biotype: lincRNA
Gene id: ENSG00000270118
Gene Name: RP11-57A19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-118
0.051
0
6mer
311-324
0.019
0
FAM224A
hsa-miR-519d-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1719-1743
0.046
0
7mer
564-589
0.017
0
6mer
632-659
0.008
0
XLOC_011677
hsa-miR-519d-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024285
Biotype: transcript isomorph
Gene id: XLOC_011677
Gene Name: XLOC_011677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4583-4602
0.016
1
8mer
4986-5006
0.015
1
8mer
320-337
0.010
1
6mer
170-196
0.008
3
7mer
215-224
0.007
0
8mer
4015-4035
0.005
1
7mer
1603-1608
0.004
1
8mer
1890-1910
0.004
1
6mer
3573-3597
0.002
1
COX10-AS1
hsa-miR-519d-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623598
Biotype: TEC
Gene id: ENSG00000236088
Gene Name: COX10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1823-1840
0.069
0
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