LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519d-3p


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Gene
miRNA
Score
DIANA Links
RP11-81A1.6
hsa-miR-519d-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618835
Biotype: sense_intronic
Gene id: ENSG00000278600
Gene Name: RP11-81A1.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
720-746
0.019
3
6mer
1875-1891
0.011
7
6mer
2154-2169
0.010
3
6mer
1290-1306
0.003
3
AC012361.1
hsa-miR-519d-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447260
Biotype: lincRNA
Gene id: ENSG00000236436
Gene Name: AC012361.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1358-1369
0.038
3
6mer
849-867
0.004
0
RP11-278I4.2
hsa-miR-519d-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
934-956
0.034
7
6mer
752-775
0.005
5
6mer
859-882
0.003
1
RP11-643A5.2
hsa-miR-519d-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557976
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-90
0.025
2
6mer
101-117
0.007
1
6mer
600-605
0.005
0
6mer
984-1003
0.005
Not Conserved
RP11-29G8.3
hsa-miR-519d-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563635
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-387
0.032
5
8mer
3866-3886
0.007
1
6mer
2324-2339
0.002
3
6mer
2381-2406
0.001
2
RP11-43F13.3
hsa-miR-519d-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000399869
Biotype: antisense
Gene id: ENSG00000215246
Gene Name: RP11-43F13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2575-2599
0.033
1
6mer
3054-3067
0.005
1
6mer
421-442
0.003
0
RP11-417O18.2
hsa-miR-519d-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620052
Biotype: lincRNA
Gene id: ENSG00000276487
Gene Name: RP11-417O18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-463
0.035
1
6mer
404-429
0.006
0
XLOC_000695
hsa-miR-519d-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-319
0.016
1
8mer
2876-2898
0.008
1
6mer
2993-3007
0.006
3
6mer
2928-2954
0.004
Not Conserved
8mer
2004-2026
0.004
0
6mer
864-888
0.003
2
INTS6-AS1
hsa-miR-519d-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_103812.1
Biotype: antisense
Gene id: NR_103812.1 (gene)
Gene Name: INTS6-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-541
0.035
4
7mer
509-532
0.006
1
RP11-264E20.2
hsa-miR-519d-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602773
Biotype: lincRNA
Gene id: ENSG00000270160
Gene Name: RP11-264E20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-81
0.037
1
6mer
435-459
0.005
1
RP11-348J24.2
hsa-miR-519d-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502934
Biotype: lincRNA
Gene id: ENSG00000250049
Gene Name: RP11-348J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2626-2640
0.027
1
6mer
2725-2746
0.005
1
6mer
2073-2083
0.004
2
7mer
1128-1155
0.004
1
6mer
1624-1647
0.002
1
RP11-582J16.4
hsa-miR-519d-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514980
Biotype: antisense
Gene id: ENSG00000251034
Gene Name: RP11-582J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-174
0.021
2
7mer
496-519
0.011
1
7mer
452-468
0.007
0
6mer
2374-2398
0.002
0
6mer
2349-2368
0.001
0
HAND2-AS1
hsa-miR-519d-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
708-727
0.012
7
7mer
2352-2371
0.011
8
6mer
428-448
0.009
6
6mer
511-527
0.004
4
6mer
338-356
0.003
1
6mer
690-706
0.003
Not Conserved
KIZ-AS1
hsa-miR-519d-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616177
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-500
0.020
1
8mer
5143-5163
0.011
2
8mer
4597-4619
0.005
0
6mer
304-331
0.004
2
6mer
2274-2292
0.001
0
RP11-266K4.13
hsa-miR-519d-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
350-369
0.018
1
7mer
37-60
0.013
0
6mer
1026-1031
0.010
0
RP11-399O19.9
hsa-miR-519d-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562983
Biotype: sense_overlapping
Gene id: ENSG00000261438
Gene Name: RP11-399O19.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1174-1197
0.023
1
6mer
594-620
0.006
3
7mer
645-660
0.005
1
6mer
1024-1045
0.005
0
6mer
666-683
0.003
1
RP11-144G6.12
hsa-miR-519d-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000431840
Biotype: processed_transcript
Gene id: ENSG00000254929
Gene Name: RP11-144G6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-905
0.036
2
RP11-328C8.4
hsa-miR-519d-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547824
Biotype: antisense
Gene id: ENSG00000257225
Gene Name: RP11-328C8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-349
0.028
5
8mer
769-792
0.013
3
SPAG5-AS1
hsa-miR-519d-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000556050
Biotype: antisense
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-750
0.028
0
8mer
785-805
0.013
0
VCAN-AS1
hsa-miR-519d-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513899
Biotype: antisense
Gene id: ENSG00000249835
Gene Name: VCAN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519d-3p
Sequence: caaagugccucccuuuagagug
MirBase ID: MIMAT0002853
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-340
0.041
7
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