LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-494-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LINC00710
hsa-miR-494-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000618245
Biotype: lincRNA
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-176
0.053
5
RP11-359E10.1
hsa-miR-494-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000603468
Biotype: lincRNA
Gene id: ENSG00000270607
Gene Name: RP11-359E10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-63
0.031
4
7mer
177-197
0.010
1
6mer
1578-1603
0.005
2
6mer
732-745
0.003
1
6mer
1200-1220
0.003
2
RAPGEF4-AS1
hsa-miR-494-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435328
Biotype: antisense
Gene id: ENSG00000228016
Gene Name: RAPGEF4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4300-4320
0.027
2
8mer
1042-1048
0.016
1
6mer
295-319
0.006
2
6mer
3389-3400
0.003
2
6mer
2858-2879
0.001
3
RAPGEF4-AS1
hsa-miR-494-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026995.1
Biotype: antisense
Gene id: NR_026995.1 (gene)
Gene Name: RAPGEF4-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4297-4317
0.027
2
8mer
1039-1045
0.016
1
6mer
292-316
0.006
2
6mer
3386-3397
0.003
2
6mer
2855-2876
0.001
3
LINC00114
hsa-miR-494-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_027065.1
Biotype: lincRNA
Gene id: NR_027065.1 (gene)
Gene Name: LINC00114
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
85-97
0.027
Not Conserved
7mer
124-143
0.014
Not Conserved
7mer
322-334
0.012
1
SOX2-OT
hsa-miR-494-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469278
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
474-495
0.053
5
SOX2-OT
hsa-miR-494-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596250
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-480
0.053
5
LINC00243
hsa-miR-494-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399196
Biotype: lincRNA
Gene id: ENSG00000214894
Gene Name: LINC00243
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-499
0.037
4
7mer
1527-1552
0.008
0
6mer
1245-1265
0.004
4
6mer
1624-1639
0.003
1
AP000344.3
hsa-miR-494-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449711
Biotype: lincRNA
Gene id: ENSG00000234928
Gene Name: AP000344.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
829-842
0.053
1
XLOC_007543
hsa-miR-494-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016147
Biotype: transcript isomorph
Gene id: XLOC_007543
Gene Name: XLOC_007543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2329-2339
0.035
2
6mer
1889-1901
0.010
7
6mer
300-315
0.004
2
6mer
1035-1047
0.002
1
6mer
308-333
0.002
1
LINC00710
hsa-miR-494-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000613357
Biotype: lincRNA
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-176
0.052
5
RP11-705C15.3
hsa-miR-494-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537616
Biotype: sense_intronic
Gene id: ENSG00000257027
Gene Name: RP11-705C15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1880-1897
0.033
Not Conserved
7mer
2208-2233
0.013
0
6mer
900-907
0.006
1
XLOC_005164
hsa-miR-494-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011688
Biotype: transcript isomorph
Gene id: XLOC_005164
Gene Name: XLOC_005164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2896-2916
0.052
10
RP11-760D2.5
hsa-miR-494-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429367
Biotype: lincRNA
Gene id: ENSG00000233288
Gene Name: RP11-760D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
893-912
0.028
0
6mer
551-563
0.011
0
8mer
2093-2111
0.010
Not Conserved
6mer
2060-2075
0.002
Not Conserved
XLOC_013866
hsa-miR-494-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028969
Biotype: transcript isomorph
Gene id: XLOC_013866
Gene Name: XLOC_013866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4428-4441
0.032
1
7mer
3072-3094
0.007
4
7mer
2434-2453
0.004
1
6mer
3402-3406
0.003
1
7mer
667-678
0.003
Not Conserved
6mer
1266-1288
0.002
1
CTD-2228A4.1
hsa-miR-494-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606282
Biotype: lincRNA
Gene id: ENSG00000271892
Gene Name: CTD-2228A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-349
0.052
1
TTC21B-AS1
hsa-miR-494-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038984.1
Biotype: antisense
Gene id: NR_038984.1 (gene)
Gene Name: TTC21B-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
628-637
0.052
2
LINC00710
hsa-miR-494-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598573
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-339
0.051
5
XLOC_012711
hsa-miR-494-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026359
Biotype: transcript isomorph
Gene id: XLOC_012711
Gene Name: XLOC_012711
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-303
0.051
1
RP11-142O6.1
hsa-miR-494-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584382
Biotype: sense_intronic
Gene id: ENSG00000266371
Gene Name: RP11-142O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
76-86
0.020
1
6mer
2701-2722
0.014
1
8mer
1241-1258
0.013
0
6mer
1512-1527
0.005
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept