LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-494-3p


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Gene
miRNA
Score
DIANA Links
CTA-941F9.10
hsa-miR-494-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19425-19431
0.013
0
7mer
21499-21521
0.009
1
8mer
6140-6146
0.007
1
7mer
20565-20572
0.004
0
7mer
9933-9953
0.003
Not Conserved
6mer
556-573
0.002
Not Conserved
6mer
862-885
0.002
0
6mer
9066-9079
0.002
0
6mer
18883-18902
0.002
0
6mer
10213-10220
0.002
1
6mer
17955-17980
0.002
2
6mer
11150-11163
0.001
1
6mer
3585-3597
0.001
0
6mer
5443-5464
0.001
1
6mer
7221-7234
0.001
0
6mer
21580-21598
0.001
1
6mer
7947-7960
0.001
1
6mer
9066-9089
0.001
3
6mer
19475-19491
0.001
0
LINC00114
hsa-miR-494-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000448579
Biotype: lincRNA
Gene id: ENSG00000223806
Gene Name: LINC00114
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
88-100
0.027
Not Conserved
7mer
325-337
0.015
1
7mer
127-146
0.014
Not Conserved
XLOC_004363
hsa-miR-494-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009935
Biotype: transcript isomorph
Gene id: XLOC_004363
Gene Name: XLOC_004363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1155-1176
0.035
1
8mer
409-435
0.020
0
XLOC_000904
hsa-miR-494-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001564
Biotype: transcript isomorph
Gene id: XLOC_000904
Gene Name: XLOC_000904
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-581
0.044
5
6mer
227-246
0.012
8
LINC01069
hsa-miR-494-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_108076.1
Biotype: lincRNA
Gene id: NR_108076.1 (gene)
Gene Name: LINC01069
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-15
0.047
1
7mer
784-796
0.008
3
RP4-568C11.4
hsa-miR-494-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
525-541
0.045
0
6mer
603-607
0.010
0
LINC00114
hsa-miR-494-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000429621
Biotype: lincRNA
Gene id: ENSG00000223806
Gene Name: LINC00114
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
88-100
0.027
Not Conserved
7mer
325-337
0.015
1
7mer
127-146
0.014
Not Conserved
RP1-225E12.2
hsa-miR-494-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585447
Biotype: antisense
Gene id: ENSG00000231329
Gene Name: RP1-225E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-113
0.043
1
6mer
77-93
0.012
4
RP1-86C11.7
hsa-miR-494-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607175
Biotype: lincRNA
Gene id: ENSG00000272468
Gene Name: RP1-86C11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-126
0.035
1
8mer
216-232
0.020
0
CTD-2643K12.3
hsa-miR-494-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558874
Biotype: lincRNA
Gene id: ENSG00000259724
Gene Name: CTD-2643K12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-97
0.032
0
7mer
53-58
0.019
1
6mer
509-524
0.003
0
RP11-662I13.2
hsa-miR-494-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546353
Biotype: antisense
Gene id: ENSG00000255921
Gene Name: RP11-662I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-293
0.054
3
AC024560.2
hsa-miR-494-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-123
0.054
0
XLOC_010453
hsa-miR-494-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021859
Biotype: transcript isomorph
Gene id: XLOC_010453
Gene Name: XLOC_010453
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1035-1042
0.029
Not Conserved
8mer
817-838
0.025
2
TEX26-AS1
hsa-miR-494-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000411835
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1054-1079
0.028
1
8mer
749-765
0.020
1
6mer
551-573
0.005
1
RP11-508M8.1
hsa-miR-494-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512965
Biotype: lincRNA
Gene id: ENSG00000249365
Gene Name: RP11-508M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
429-447
0.054
3
RP1-66N13.4
hsa-miR-494-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615740
Biotype: lincRNA
Gene id: ENSG00000274261
Gene Name: RP1-66N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-302
0.054
1
MIR663AHG
hsa-miR-494-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615682
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-286
0.053
1
TEX26-AS1
hsa-miR-494-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000591131
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-94
0.027
1
8mer
550-575
0.026
1
XLOC_001401
hsa-miR-494-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
430-453
0.033
0
6mer
2260-2285
0.016
0
6mer
2392-2410
0.005
Not Conserved
RP11-383G6.3
hsa-miR-494-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460977
Biotype: sense_overlapping
Gene id: ENSG00000244327
Gene Name: RP11-383G6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-258
0.041
2
7mer
118-131
0.012
1
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