LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-494-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002317
hsa-miR-494-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004443
Biotype: transcript isomorph
Gene id: XLOC_002317
Gene Name: XLOC_002317
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3553-3573
0.043
1
8mer
1822-1829
0.007
0
6mer
3786-3813
0.005
1
6mer
3307-3329
0.003
0
RP11-347J14.7
hsa-miR-494-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-364
0.041
1
7mer
649-654
0.017
0
LINC00710
hsa-miR-494-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000617890
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-593
0.046
5
6mer
204-224
0.011
7
DLX6-AS1
hsa-miR-494-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437331
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-96
0.042
5
6mer
3659-3675
0.013
12
6mer
2018-2039
0.002
1
6mer
2371-2392
0.001
1
PLCH1-AS1
hsa-miR-494-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475196
Biotype: antisense
Gene id: ENSG00000239508
Gene Name: PLCH1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1199-1210
0.051
1
6mer
305-321
0.006
1
HYMAI
hsa-miR-494-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_002768.1
Biotype: sense
Gene id: NR_002768.1 (gene)
Gene Name: HYMAI
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1179-1202
0.028
1
8mer
3448-3461
0.009
2
7mer
2891-2917
0.007
2
7mer
642-655
0.004
0
6mer
212-233
0.004
0
6mer
559-571
0.002
0
6mer
3142-3158
0.001
1
6mer
3341-3366
0.001
1
RP11-461L18.1
hsa-miR-494-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000561496
Biotype: lincRNA
Gene id: ENSG00000261382
Gene Name: RP11-461L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1703-1712
0.050
1
7mer
1356-1375
0.007
1
LINC00216
hsa-miR-494-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623548
Biotype: lincRNA
Gene id: ENSG00000279636
Gene Name: LINC00216
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
747-761
0.043
0
6mer
948-966
0.014
4
RP11-30L3.2
hsa-miR-494-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577641
Biotype: antisense
Gene id: ENSG00000266696
Gene Name: RP11-30L3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
317-337
0.057
1
RP11-96H17.1
hsa-miR-494-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568741
Biotype: retained_intron
Gene id: ENSG00000261502
Gene Name: RP11-96H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-302
0.033
7
7mer
909-930
0.009
1
7mer
1261-1271
0.007
1
7mer
1529-1556
0.007
1
LINC00114
hsa-miR-494-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411989
Biotype: lincRNA
Gene id: ENSG00000223806
Gene Name: LINC00114
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
88-100
0.027
Not Conserved
7mer
127-146
0.014
Not Conserved
7mer
325-337
0.011
1
6mer
898-916
0.003
1
6mer
891-916
0.002
1
LINC00461
hsa-miR-494-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506664
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-85
0.056
7
AC090044.1
hsa-miR-494-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110118.1
Biotype: lincRNA
Gene id: NR_110118.1 (gene)
Gene Name: AC090044.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1190-1217
0.039
1
7mer
3185-3200
0.008
1
7mer
1308-1319
0.005
2
7mer
1831-1845
0.005
3
SOX2-OT
hsa-miR-494-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476964
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-504
0.043
5
6mer
19-29
0.013
12
RP6-91H8.3
hsa-miR-494-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602957
Biotype: lincRNA
Gene id: ENSG00000269927
Gene Name: RP6-91H8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1418-1430
0.044
3
8mer
1672-1682
0.012
0
RP11-338K13.1
hsa-miR-494-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608962
Biotype: antisense
Gene id: ENSG00000273267
Gene Name: RP11-338K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-456
0.056
0
RP1-265C24.8
hsa-miR-494-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000565046
Biotype: lincRNA
Gene id: ENSG00000261839
Gene Name: RP1-265C24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2299-2313
0.033
1
8mer
2573-2584
0.022
0
SLC7A11-AS1
hsa-miR-494-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510066
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-392
0.041
5
8mer
54-68
0.014
1
CTB-186H2.3
hsa-miR-494-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612584
Biotype: antisense
Gene id: ENSG00000275431
Gene Name: CTB-186H2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3860-3868
0.019
2
8mer
3601-3618
0.012
0
8mer
2827-2833
0.010
0
6mer
3597-3610
0.005
0
6mer
57-70
0.004
1
6mer
3383-3395
0.003
0
6mer
1955-1969
0.002
1
6mer
2852-2866
0.001
1
AC093627.7
hsa-miR-494-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465755
Biotype: lincRNA
Gene id: ENSG00000232325
Gene Name: AC093627.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
337-352
0.044
1
6mer
405-425
0.012
1
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