LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-494-3p


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Gene
miRNA
Score
DIANA Links
AC144568.2
hsa-miR-494-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522481
Biotype: lincRNA
Gene id: ENSG00000253896
Gene Name: AC144568.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
888-908
0.053
0
6mer
351-360
0.012
1
TEX26-AS1
hsa-miR-494-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000429200
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
635-660
0.035
1
8mer
163-179
0.030
1
ENOX1-AS1
hsa-miR-494-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444442
Biotype: lincRNA
Gene id: ENSG00000233821
Gene Name: ENOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2063-2076
0.026
1
7mer
2870-2893
0.014
4
8mer
1302-1317
0.009
2
8mer
1849-1863
0.008
2
6mer
3056-3077
0.004
3
6mer
1509-1513
0.003
4
DLX6-AS1
hsa-miR-494-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605417
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-96
0.042
5
6mer
4015-4031
0.011
12
6mer
3743-3766
0.008
11
6mer
2018-2039
0.002
1
6mer
2371-2392
0.001
1
RP4-761J14.8
hsa-miR-494-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000586338
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
51-74
0.064
6
XLOC_007087
hsa-miR-494-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015010
Biotype: transcript isomorph
Gene id: XLOC_007087
Gene Name: XLOC_007087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1373-1386
0.012
0
8mer
727-743
0.011
0
7mer
4201-4219
0.008
0
7mer
4472-4496
0.008
2
7mer
3954-3971
0.006
1
7mer
2607-2618
0.004
0
7mer
3166-3190
0.004
0
6mer
4548-4565
0.003
1
6mer
978-1001
0.003
1
6mer
3964-3980
0.003
1
6mer
1958-1984
0.002
Not Conserved
6mer
1362-1386
0.001
1
RP13-487P22.1
hsa-miR-494-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565581
Biotype: sense_intronic
Gene id: ENSG00000261529
Gene Name: RP13-487P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-280
0.027
1
7mer
59-79
0.016
0
7mer
1529-1537
0.008
1
6mer
1041-1059
0.005
1
6mer
340-364
0.004
0
6mer
1016-1033
0.003
0
AC005775.2
hsa-miR-494-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592413
Biotype: antisense
Gene id: ENSG00000266933
Gene Name: AC005775.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
15-35
0.061
0
6mer
299-319
0.003
0
XLOC_001451
hsa-miR-494-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002884
Biotype: transcript isomorph
Gene id: XLOC_001451
Gene Name: XLOC_001451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-122
0.034
3
8mer
2407-2426
0.020
0
7mer
307-326
0.010
Not Conserved
LINC00702
hsa-miR-494-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608792
Biotype: lincRNA
Gene id: ENSG00000233117
Gene Name: LINC00702
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-231
0.038
1
9mer
1602-1622
0.013
0
7mer
5640-5658
0.007
1
6mer
5816-5830
0.004
2
6mer
1440-1457
0.001
1
AC012354.6
hsa-miR-494-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425325
Biotype: lincRNA
Gene id: ENSG00000225156
Gene Name: AC012354.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-122
0.034
3
8mer
2407-2426
0.020
0
7mer
307-326
0.010
Not Conserved
RP11-301J16.7
hsa-miR-494-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000450212
Biotype: antisense
Gene id: ENSG00000226619
Gene Name: RP11-301J16.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27-43
0.064
0
WT1-AS
hsa-miR-494-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525436
Biotype: antisense
Gene id: ENSG00000183242
Gene Name: WT1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
991-1007
0.061
6
6mer
1113-1135
0.003
1
ARHGEF3-AS1
hsa-miR-494-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477246
Biotype: antisense
Gene id: ENSG00000240198
Gene Name: ARHGEF3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
401-419
0.053
1
7mer
15-39
0.010
Not Conserved
AC009299.3
hsa-miR-494-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436506
Biotype: lincRNA
Gene id: ENSG00000227403
Gene Name: AC009299.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
737-757
0.063
4
MIR4534
hsa-miR-494-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
612-621
0.005
0
6mer
19785-19810
0.004
9
8mer
3875-3891
0.003
0
7mer
26536-26557
0.003
2
6mer
54206-54218
0.003
0
7mer
14516-14537
0.002
Not Conserved
6mer
41890-41912
0.002
6
7mer
16406-16418
0.002
0
6mer
28003-28015
0.002
1
6mer
46862-46883
0.002
1
6mer
42444-42469
0.002
0
6mer
53366-53378
0.002
1
6mer
4577-4592
0.001
1
6mer
30063-30090
0.001
1
6mer
53683-53695
0.001
Not Conserved
6mer
43237-43260
0.001
1
6mer
30610-30622
0.001
0
6mer
30931-30943
0.001
1
6mer
33326-33341
0.001
1
6mer
7925-7937
0.001
1
6mer
42952-42964
0.001
1
6mer
6137-6148
0.001
1
6mer
27054-27081
0.001
0
6mer
48901-48916
0.001
Not Conserved
6mer
12232-12244
0.001
0
6mer
28285-28304
0.001
1
6mer
1291-1304
0.001
1
6mer
12675-12696
0.001
1
6mer
14819-14832
0.001
1
6mer
26186-26198
0.001
1
6mer
27550-27566
0.001
1
6mer
44228-44244
0.001
1
6mer
32877-32899
0.001
1
6mer
16840-16852
0.001
1
6mer
46353-46365
0.001
1
6mer
46466-46487
0.001
0
6mer
1527-1548
0.001
0
6mer
16976-16994
0.001
1
6mer
24459-24479
0.001
0
6mer
7748-7768
0.001
0
6mer
12368-12380
0.001
0
XLOC_002407
hsa-miR-494-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003450
Biotype: transcript isomorph
Gene id: XLOC_002407
Gene Name: XLOC_002407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-182
0.045
9
7mer
558-576
0.017
5
XLOC_010797
hsa-miR-494-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022468
Biotype: transcript isomorph
Gene id: XLOC_010797
Gene Name: XLOC_010797
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1177-1204
0.049
2
6mer
629-647
0.008
9
6mer
1000-1020
0.005
4
XLOC_011179
hsa-miR-494-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023310
Biotype: transcript isomorph
Gene id: XLOC_011179
Gene Name: XLOC_011179
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1066-1080
0.038
1
6mer
174-199
0.013
1
6mer
723-744
0.012
1
LINC01440
hsa-miR-494-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000608080
Biotype: lincRNA
Gene id: ENSG00000235166
Gene Name: LINC01440
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-512
0.053
3
6mer
70-94
0.009
4
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