LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-494-3p


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Gene
miRNA
Score
DIANA Links
RP5-1112D6.8
hsa-miR-494-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607434
Biotype: antisense
Gene id: ENSG00000272356
Gene Name: RP5-1112D6.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4211-4233
0.037
10
9mer
2095-2110
0.010
4
6mer
4167-4187
0.009
9
8mer
3343-3361
0.008
0
6mer
2017-2027
0.004
11
6mer
3531-3552
0.002
1
6mer
2773-2800
0.001
1
RP11-585P4.6
hsa-miR-494-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617300
Biotype: sense_intronic
Gene id: ENSG00000273987
Gene Name: RP11-585P4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
23-37
0.071
1
XLOC_011348
hsa-miR-494-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023504
Biotype: transcript isomorph
Gene id: XLOC_011348
Gene Name: XLOC_011348
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
368-383
0.071
1
XLOC_000782
hsa-miR-494-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-298
0.035
0
6mer
2255-2273
0.020
0
7mer
1116-1126
0.015
0
RP11-407B7.3
hsa-miR-494-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615240
Biotype: lincRNA
Gene id: ENSG00000276407
Gene Name: RP11-407B7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
131-151
0.056
2
8mer
115-126
0.014
0
RP11-73M11.3
hsa-miR-494-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000615844
Biotype: sense_intronic
Gene id: ENSG00000277545
Gene Name: RP11-73M11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
553-566
0.047
Not Conserved
7mer
505-527
0.022
0
XLOC_013502
hsa-miR-494-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4362-4380
0.016
0
6mer
4533-4551
0.008
0
6mer
4019-4036
0.007
0
6mer
848-873
0.005
0
6mer
1366-1384
0.004
0
6mer
1777-1800
0.003
0
6mer
3331-3345
0.003
0
6mer
3678-3700
0.003
0
6mer
2395-2403
0.003
0
6mer
1960-1973
0.003
0
6mer
3154-3173
0.003
0
6mer
1534-1554
0.003
0
6mer
2741-2746
0.002
0
6mer
478-490
0.002
Not Conserved
6mer
2468-2485
0.002
0
6mer
2639-2656
0.001
Not Conserved
XLOC_010267
hsa-miR-494-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020228
Biotype: transcript isomorph
Gene id: XLOC_010267
Gene Name: XLOC_010267
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-126
0.065
0
6mer
1202-1229
0.005
1
RP4-760C5.5
hsa-miR-494-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4367-4385
0.016
0
6mer
4538-4556
0.008
0
6mer
4024-4041
0.007
0
6mer
853-878
0.005
0
6mer
1371-1389
0.004
0
6mer
1782-1805
0.003
0
6mer
3336-3350
0.003
0
6mer
3683-3705
0.003
0
6mer
2400-2408
0.003
0
6mer
1965-1978
0.003
0
6mer
3159-3178
0.003
0
6mer
1539-1559
0.003
0
6mer
2746-2751
0.002
0
6mer
483-495
0.002
Not Conserved
6mer
2473-2490
0.002
0
6mer
2644-2661
0.001
Not Conserved
RP11-495K9.3
hsa-miR-494-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508505
Biotype: lincRNA
Gene id: ENSG00000248703
Gene Name: RP11-495K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-131
0.064
0
6mer
1207-1234
0.005
1
KCNQ1OT1
hsa-miR-494-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70682-70697
0.011
1
8mer
16500-16517
0.010
1
8mer
5028-5038
0.009
Not Conserved
7mer
89577-89599
0.006
3
6mer
168-181
0.005
1
8mer
61062-61084
0.005
1
7mer
86864-86886
0.004
2
8mer
68795-68806
0.003
0
7mer
83334-83349
0.003
0
7mer
66297-66322
0.003
1
6mer
65007-65033
0.002
1
6mer
72221-72239
0.002
1
6mer
71947-71971
0.002
0
6mer
49184-49207
0.001
0
6mer
23675-23687
0.001
0
6mer
16381-16401
0.001
0
6mer
22727-22748
0.001
0
6mer
64973-64992
0.000
1
TPTEP1
hsa-miR-494-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415121
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-217
0.030
1
7mer
968-973
0.022
0
6mer
1052-1066
0.017
1
RP11-167H9.4
hsa-miR-494-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489690
Biotype: antisense
Gene id: ENSG00000243944
Gene Name: RP11-167H9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
489-505
0.068
0
RP3-467L1.4
hsa-miR-494-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451646
Biotype: antisense
Gene id: ENSG00000236266
Gene Name: RP3-467L1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
167-193
0.061
2
6mer
107-111
0.007
1
HAGLR
hsa-miR-494-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416928
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
489-512
0.058
1
7mer
3560-3577
0.007
1
6mer
3398-3409
0.003
4
RP11-5C23.1
hsa-miR-494-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608064
Biotype: antisense
Gene id: ENSG00000272760
Gene Name: RP11-5C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
878-900
0.058
0
6mer
841-856
0.009
2
FLJ46284
hsa-miR-494-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623616
Biotype: TEC
Gene id: ENSG00000248858
Gene Name: FLJ46284
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4120-4142
0.039
1
8mer
1351-1366
0.009
1
7mer
3480-3496
0.008
1
7mer
3069-3093
0.004
0
6mer
649-671
0.004
0
6mer
1067-1081
0.003
1
6mer
1779-1791
0.002
0
C17orf100
hsa-miR-494-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000542475
Biotype: lincRNA
Gene id: ENSG00000256806
Gene Name: C17orf100
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1016-1031
0.061
3
6mer
640-664
0.006
4
NEAT1
hsa-miR-494-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22633-22658
0.012
6
7mer
18948-18963
0.008
2
7mer
6839-6863
0.005
1
7mer
13957-13977
0.005
1
7mer
17406-17427
0.004
0
7mer
4487-4503
0.004
1
7mer
6290-6298
0.004
0
7mer
21235-21246
0.003
Not Conserved
6mer
1308-1332
0.003
4
6mer
15530-15556
0.002
1
7mer
7158-7175
0.002
0
6mer
11404-11420
0.002
1
6mer
8271-8290
0.002
1
6mer
11841-11866
0.002
2
6mer
7552-7569
0.002
1
7mer
2569-2594
0.002
0
6mer
4975-4983
0.002
1
6mer
18379-18394
0.001
0
6mer
7566-7587
0.001
3
FAM201A
hsa-miR-494-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377680
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3310-3335
0.059
0
6mer
1299-1312
0.006
1
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