LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-494-3p


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Gene
miRNA
Score
DIANA Links
bP-21264C1.2
hsa-miR-494-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623409
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-50
0.070
0
6mer
47-70
0.014
0
XLOC_010106
hsa-miR-494-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020820
Biotype: transcript isomorph
Gene id: XLOC_010106
Gene Name: XLOC_010106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-130
0.060
1
7mer
2595-2608
0.017
4
6mer
2443-2455
0.003
1
6mer
1386-1409
0.001
0
CTA-796E4.5
hsa-miR-494-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27772-27798
0.014
1
7mer
25312-25322
0.008
4
8mer
1088-1098
0.008
0
7mer
21156-21174
0.005
2
7mer
3876-3881
0.004
0
7mer
24615-24639
0.004
1
6mer
30829-30849
0.003
0
7mer
11629-11644
0.003
0
7mer
10023-10037
0.003
2
6mer
2663-2681
0.003
1
7mer
11299-11312
0.002
1
6mer
5571-5592
0.002
2
6mer
16657-16667
0.002
3
6mer
12118-12139
0.002
2
6mer
5154-5168
0.002
2
6mer
30497-30514
0.002
1
6mer
30901-30917
0.002
2
6mer
24020-24035
0.002
1
6mer
22713-22734
0.002
1
6mer
9931-9948
0.002
2
6mer
5975-5984
0.001
0
6mer
2967-2981
0.001
1
6mer
14298-14323
0.001
0
6mer
11958-11973
0.001
0
6mer
14578-14601
0.001
1
RP11-295I5.4
hsa-miR-494-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620933
Biotype: antisense
Gene id: ENSG00000275197
Gene Name: RP11-295I5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-535
0.081
9
bP-2189O9.3
hsa-miR-494-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624813
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-189
0.067
0
6mer
186-209
0.015
0
XLOC_012004
hsa-miR-494-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
648-663
0.065
9
6mer
367-378
0.010
10
6mer
2493-2509
0.003
1
6mer
1336-1360
0.002
1
RP13-20L14.6
hsa-miR-494-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578344
Biotype: antisense
Gene id: ENSG00000265458
Gene Name: RP13-20L14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-77
0.079
1
KCNMA1-AS1
hsa-miR-494-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429850
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1648-1663
0.062
10
7mer
68-79
0.012
1
6mer
563-589
0.004
5
LL22NC03-22D1.1
hsa-miR-494-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
898-910
0.025
1
8mer
9049-9059
0.008
0
8mer
19212-19226
0.006
1
7mer
14318-14345
0.006
0
6mer
19139-19162
0.003
4
6mer
13897-13913
0.003
5
6mer
13025-13041
0.003
4
6mer
16999-17011
0.003
3
7mer
21430-21439
0.003
0
7mer
6419-6441
0.003
0
7mer
18809-18822
0.002
1
6mer
5227-5247
0.002
4
6mer
10742-10766
0.002
2
6mer
15868-15882
0.002
3
6mer
18707-18723
0.002
0
6mer
9813-9828
0.002
2
6mer
7209-7223
0.001
1
6mer
2356-2373
0.001
1
6mer
3716-3737
0.001
0
AC006273.4
hsa-miR-494-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000606966
Biotype: lincRNA
Gene id: ENSG00000272473
Gene Name: AC006273.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-53
0.065
1
6mer
730-742
0.007
0
6mer
557-569
0.005
0
RPA3-AS1
hsa-miR-494-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_034084.1
Biotype: sense
Gene id: NR_034084.1 (gene)
Gene Name: RPA3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-181
0.074
9
6mer
646-670
0.003
1
LINC00534
hsa-miR-494-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517400
Biotype: lincRNA
Gene id: ENSG00000253394
Gene Name: LINC00534
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-790
0.076
2
RP11-266K4.14
hsa-miR-494-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-100
0.060
0
7mer
2344-2367
0.011
0
6mer
3341-3353
0.005
0
RP11-744K17.2
hsa-miR-494-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582527
Biotype: lincRNA
Gene id: ENSG00000266885
Gene Name: RP11-744K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3558-3573
0.052
0
6mer
763-786
0.011
1
6mer
1058-1080
0.007
1
6mer
1758-1768
0.003
0
6mer
2214-2230
0.002
0
LINC00662
hsa-miR-494-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590523
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-125
0.048
0
6mer
380-402
0.016
0
6mer
1227-1239
0.011
0
LINC00662
hsa-miR-494-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027301.1
Biotype: lincRNA
Gene id: NR_027301.1 (gene)
Gene Name: LINC00662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-123
0.048
0
6mer
378-400
0.016
0
6mer
1225-1237
0.011
0
RP11-560I19.1
hsa-miR-494-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000446053
Biotype: lincRNA
Gene id: ENSG00000234418
Gene Name: RP11-560I19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
453-462
0.046
0
8mer
410-416
0.028
0
RP11-22A3.1
hsa-miR-494-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503163
Biotype: lincRNA
Gene id: ENSG00000250098
Gene Name: RP11-22A3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-307
0.073
3
XLOC_004787
hsa-miR-494-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010304
Biotype: transcript isomorph
Gene id: XLOC_004787
Gene Name: XLOC_004787
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
595-618
0.073
4
XLOC_003706
hsa-miR-494-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008264
Biotype: transcript isomorph
Gene id: XLOC_003706
Gene Name: XLOC_003706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
924-937
0.049
1
7mer
722-744
0.012
0
7mer
818-834
0.008
1
6mer
1059-1075
0.003
0
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