LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-494-3p


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Gene
miRNA
Score
DIANA Links
IPW
hsa-miR-494-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_023915.1
Biotype: lincRNA
Gene id: NR_023915.1 (gene)
Gene Name: IPW
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
526-539
0.039
1
8mer
3261-3277
0.029
1
6mer
4449-4467
0.008
0
6mer
4448-4452
0.007
0
6mer
1283-1299
0.007
6
6mer
2377-2390
0.004
5
6mer
2919-2943
0.003
2
MIR6818
hsa-miR-494-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26938-26962
0.018
1
7mer
48528-48536
0.011
7
7mer
40443-40465
0.007
5
7mer
24251-24265
0.006
1
7mer
4707-4723
0.005
1
7mer
10905-10924
0.005
0
6mer
1029-1042
0.003
1
6mer
41849-41862
0.003
7
6mer
363-371
0.003
0
6mer
16643-16665
0.002
0
6mer
6197-6213
0.002
1
6mer
32342-32359
0.002
5
6mer
34669-34684
0.002
4
7mer
40076-40089
0.002
0
6mer
24448-24472
0.002
2
6mer
37581-37600
0.002
7
6mer
6604-6620
0.002
0
6mer
1542-1559
0.002
2
6mer
39614-39635
0.002
1
6mer
3395-3419
0.002
3
7mer
43997-44022
0.002
0
6mer
15930-15946
0.002
3
6mer
12240-12257
0.002
1
6mer
2706-2718
0.001
1
6mer
20884-20890
0.001
Not Conserved
6mer
39895-39909
0.001
0
6mer
8376-8402
0.001
4
6mer
22678-22688
0.001
1
6mer
21332-21344
0.001
0
6mer
22262-22274
0.001
1
6mer
3080-3096
0.001
0
6mer
3368-3381
0.001
4
6mer
3375-3398
0.000
0
RP1-121G13.2
hsa-miR-494-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411442
Biotype: antisense
Gene id: ENSG00000228082
Gene Name: RP1-121G13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
37-57
0.095
4
bP-2189O9.3
hsa-miR-494-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
768-793
0.080
0
6mer
790-813
0.014
0
RP11-179K3.2
hsa-miR-494-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425902
Biotype: lincRNA
Gene id: ENSG00000224714
Gene Name: RP11-179K3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-388
0.070
2
8mer
696-722
0.024
0
XLOC_013274
hsa-miR-494-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4485-4501
0.051
1
6mer
445-461
0.012
1
6mer
5530-5551
0.008
1
6mer
6341-6353
0.006
0
6mer
6509-6526
0.006
0
6mer
3911-3923
0.006
1
6mer
3441-3454
0.003
0
FLJ26245
hsa-miR-494-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566900
Biotype: lincRNA
Gene id: ENSG00000261122
Gene Name: FLJ26245
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1278-1302
0.019
0
6mer
1366-1391
0.018
0
6mer
703-708
0.014
0
6mer
854-880
0.011
0
6mer
923-945
0.010
0
6mer
767-790
0.009
0
6mer
938-960
0.009
0
RP11-96K19.4
hsa-miR-494-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
825-837
0.022
1
6mer
51-61
0.022
1
7mer
1156-1176
0.021
1
7mer
1404-1415
0.018
1
6mer
3656-3674
0.005
1
6mer
2830-2838
0.001
Not Conserved
AC005592.3
hsa-miR-494-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000566527
Biotype: lincRNA
Gene id: ENSG00000261757
Gene Name: AC005592.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-167
0.040
1
7mer
586-602
0.014
1
7mer
1191-1212
0.009
0
6mer
1491-1510
0.008
2
6mer
1507-1525
0.008
3
6mer
866-878
0.006
2
6mer
501-518
0.005
1
XLOC_002975
hsa-miR-494-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006356
Biotype: transcript isomorph
Gene id: XLOC_002975
Gene Name: XLOC_002975
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
135-155
0.060
2
8mer
90-101
0.015
0
7mer
894-915
0.010
1
6mer
589-614
0.004
2
TEX26-AS1
hsa-miR-494-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000591300
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
649-674
0.037
1
8mer
5-21
0.033
1
7mer
196-216
0.017
1
LINC00453
hsa-miR-494-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000455857
Biotype: lincRNA
Gene id: ENSG00000274766
Gene Name: LINC00453
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
439-454
0.088
1
RP11-576I22.2
hsa-miR-494-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416416
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-330
0.065
8
7mer
1799-1826
0.015
5
6mer
1522-1537
0.004
1
6mer
1245-1265
0.003
1
XLOC_002814
hsa-miR-494-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006224
Biotype: transcript isomorph
Gene id: XLOC_002814
Gene Name: XLOC_002814
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-118
0.047
1
7mer
182-197
0.039
1
RP11-1057B8.2
hsa-miR-494-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505083
Biotype: lincRNA
Gene id: ENSG00000251218
Gene Name: RP11-1057B8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2069-2091
0.057
0
8mer
291-309
0.020
1
6mer
1969-1992
0.006
0
6mer
217-244
0.005
1
SNORA59B
hsa-miR-494-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578183
Biotype: sense_intronic
Gene id: ENSG00000266079
Gene Name: SNORA59B
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-263
0.083
3
6mer
583-598
0.003
Not Conserved
bP-21264C1.2
hsa-miR-494-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624052
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-145
0.072
0
6mer
142-165
0.014
0
RP11-407B7.3
hsa-miR-494-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615650
Biotype: lincRNA
Gene id: ENSG00000276407
Gene Name: RP11-407B7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
99-119
0.067
2
8mer
54-65
0.017
0
SEMA6A-AS1
hsa-miR-494-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508640
Biotype: antisense
Gene id: ENSG00000248445
Gene Name: SEMA6A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
681-706
0.084
6
AC093381.2
hsa-miR-494-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000434559
Biotype: lincRNA
Gene id: ENSG00000234308
Gene Name: AC093381.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
327-343
0.041
1
8mer
65-85
0.030
0
6mer
605-624
0.006
2
6mer
339-359
0.006
4
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