LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-494-3p


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Gene
miRNA
Score
DIANA Links
LINC01237
hsa-miR-494-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439601
Biotype: antisense
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
491-510
0.043
1
6mer
427-453
0.009
0
RP3-368A4.5
hsa-miR-494-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603037
Biotype: sense_intronic
Gene id: ENSG00000271430
Gene Name: RP3-368A4.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-119
0.036
0
7mer
3530-3555
0.008
0
6mer
2951-2966
0.003
2
6mer
2235-2253
0.002
0
6mer
2066-2078
0.001
1
6mer
1879-1896
0.001
0
TSIX
hsa-miR-494-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18174-18189
0.009
1
7mer
28492-28506
0.007
2
7mer
9009-9014
0.006
1
7mer
22697-22712
0.003
1
7mer
17443-17457
0.003
0
7mer
9704-9724
0.003
0
6mer
1150-1165
0.003
1
6mer
687-699
0.002
0
6mer
4657-4672
0.002
1
6mer
21944-21958
0.002
1
6mer
29776-29793
0.002
2
6mer
2417-2433
0.002
1
7mer
28096-28115
0.002
Not Conserved
6mer
23334-23347
0.002
Not Conserved
6mer
25152-25165
0.001
1
6mer
8428-8441
0.001
0
6mer
11787-11808
0.001
Not Conserved
XLOC_000992
hsa-miR-494-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001651
Biotype: transcript isomorph
Gene id: XLOC_000992
Gene Name: XLOC_000992
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-288
0.011
Not Conserved
7mer
89-108
0.011
Not Conserved
7mer
950-969
0.009
Not Conserved
7mer
611-617
0.008
Not Conserved
6mer
1122-1127
0.004
Not Conserved
6mer
443-448
0.004
Not Conserved
6mer
1033-1053
0.004
Not Conserved
XLOC_004271
hsa-miR-494-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010613
Biotype: transcript isomorph
Gene id: XLOC_004271
Gene Name: XLOC_004271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3514-3536
0.043
1
6mer
3620-3641
0.003
0
6mer
1549-1561
0.002
1
6mer
3061-3075
0.002
0
RP11-693J15.5
hsa-miR-494-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6101-6124
0.040
3
7mer
7266-7284
0.003
1
6mer
1112-1134
0.002
1
6mer
7925-7941
0.002
1
6mer
6508-6520
0.002
1
6mer
3585-3611
0.001
0
6mer
2679-2696
0.001
1
RP11-140I24.1
hsa-miR-494-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000555721
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-577
0.017
1
8mer
1036-1058
0.016
2
8mer
650-673
0.008
1
7mer
468-485
0.005
1
6mer
436-462
0.004
0
RP11-266K4.13
hsa-miR-494-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1185-1195
0.027
1
6mer
38-55
0.017
1
6mer
415-419
0.006
0
LINC00114
hsa-miR-494-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_027067.1
Biotype: lincRNA
Gene id: NR_027067.1 (gene)
Gene Name: LINC00114
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
154-166
0.025
Not Conserved
7mer
193-212
0.013
Not Conserved
7mer
391-403
0.012
1
RP11-403B2.5
hsa-miR-494-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560839
Biotype: lincRNA
Gene id: ENSG00000259443
Gene Name: RP11-403B2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-365
0.050
0
XXbac-BPG181B23.7
hsa-miR-494-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606743
Biotype: lincRNA
Gene id: ENSG00000272221
Gene Name: XXbac-BPG181B23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-216
0.049
1
RP11-445O3.3
hsa-miR-494-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2570-2588
0.030
0
6mer
2988-3008
0.015
0
6mer
1681-1693
0.005
0
SOX2-OT
hsa-miR-494-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491282
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-600
0.049
5
RP11-214K3.24
hsa-miR-494-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621669
Biotype: lincRNA
Gene id: ENSG00000275389
Gene Name: RP11-214K3.24
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2441-2467
0.046
4
8mer
1287-1306
0.003
Not Conserved
RP11-154D6.1
hsa-miR-494-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000615921
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-251
0.026
3
8mer
4-10
0.024
1
SOX2-OT
hsa-miR-494-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466034
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-519
0.049
5
LINC00710
hsa-miR-494-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000622401
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-710
0.049
5
RP11-533E19.5
hsa-miR-494-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567904
Biotype: lincRNA
Gene id: ENSG00000260360
Gene Name: RP11-533E19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1220-1237
0.044
4
6mer
813-826
0.005
2
RP11-100K18.1
hsa-miR-494-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577382
Biotype: lincRNA
Gene id: ENSG00000266213
Gene Name: RP11-100K18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2360-2381
0.012
1
7mer
2650-2663
0.012
0
7mer
2005-2022
0.012
3
6mer
2548-2561
0.007
2
6mer
730-745
0.003
0
6mer
277-285
0.003
0
RP11-295H24.4
hsa-miR-494-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617563
Biotype: lincRNA
Gene id: ENSG00000275580
Gene Name: RP11-295H24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-494-3p
Sequence: ugaaacauacacgggaaaccuc
MirBase ID: MIMAT0002816
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-535
0.049
3
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