LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
RP11-426C22.5
hsa-miR-4782-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562902
Biotype: lincRNA
Gene id: ENSG00000260517
Gene Name: RP11-426C22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-29
0.037
4
RP11-88I18.2
hsa-miR-4782-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592778
Biotype: antisense
Gene id: ENSG00000233178
Gene Name: RP11-88I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
581-604
0.037
1
RP11-673E1.1
hsa-miR-4782-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509873
Biotype: lincRNA
Gene id: ENSG00000251600
Gene Name: RP11-673E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
952-967
0.037
1
TTTY14
hsa-miR-4782-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000452584
Biotype: lincRNA
Gene id: ENSG00000176728
Gene Name: TTTY14
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
594-609
0.037
0
XLOC_007214
hsa-miR-4782-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015168
Biotype: transcript isomorph
Gene id: XLOC_007214
Gene Name: XLOC_007214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-72
0.026
5
7mer
21-46
0.011
3
XLOC_010894
hsa-miR-4782-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022350
Biotype: transcript isomorph
Gene id: XLOC_010894
Gene Name: XLOC_010894
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1148-1174
0.036
1
RP11-624C23.1
hsa-miR-4782-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519689
Biotype: antisense
Gene id: ENSG00000253535
Gene Name: RP11-624C23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
48-64
0.036
0
CTD-2006C1.2
hsa-miR-4782-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-94
0.036
0
FAM95B1
hsa-miR-4782-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000593216
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
621-645
0.036
0
RP11-568A19.1
hsa-miR-4782-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566236
Biotype: lincRNA
Gene id: ENSG00000259819
Gene Name: RP11-568A19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-314
0.036
7
AC003991.3
hsa-miR-4782-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447058
Biotype: antisense
Gene id: ENSG00000228113
Gene Name: AC003991.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-506
0.036
1
RP1-274L7.1
hsa-miR-4782-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000458525
Biotype: lincRNA
Gene id: ENSG00000229702
Gene Name: RP1-274L7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-283
0.024
3
7mer
1011-1031
0.008
1
6mer
1335-1350
0.003
1
MKLN1-AS
hsa-miR-4782-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416220
Biotype: antisense
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-131
0.036
1
RP11-91K9.1
hsa-miR-4782-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436078
Biotype: lincRNA
Gene id: ENSG00000231574
Gene Name: RP11-91K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-414
0.024
1
7mer
1119-1146
0.007
Not Conserved
6mer
27-51
0.005
1
RP11-358B23.5
hsa-miR-4782-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592536
Biotype: antisense
Gene id: ENSG00000267758
Gene Name: RP11-358B23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-330
0.027
6
6mer
474-478
0.008
3
XLOC_000566
hsa-miR-4782-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001280
Biotype: transcript isomorph
Gene id: XLOC_000566
Gene Name: XLOC_000566
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-53
0.020
0
8mer
1462-1475
0.015
0
RP11-999E24.3
hsa-miR-4782-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000563647
Biotype: sense_overlapping
Gene id: ENSG00000259969
Gene Name: RP11-999E24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-755
0.032
1
6mer
728-755
0.003
Not Conserved
RP11-624C23.1
hsa-miR-4782-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523578
Biotype: antisense
Gene id: ENSG00000253535
Gene Name: RP11-624C23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
48-64
0.035
0
XLOC_008666
hsa-miR-4782-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017891
Biotype: transcript isomorph
Gene id: XLOC_008666
Gene Name: XLOC_008666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2300-2320
0.035
Not Conserved
MIR4313
hsa-miR-4782-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-328
0.021
0
6mer
190-198
0.014
1
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