LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
RP11-618M23.2
hsa-miR-4782-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519185
Biotype: lincRNA
Gene id: ENSG00000254201
Gene Name: RP11-618M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-30
0.039
1
RP11-231L11.3
hsa-miR-4782-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000513802
Biotype: sense_intronic
Gene id: ENSG00000248773
Gene Name: RP11-231L11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-48
0.039
1
XLOC_013621
hsa-miR-4782-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028276
Biotype: transcript isomorph
Gene id: XLOC_013621
Gene Name: XLOC_013621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1318-1336
0.039
0
RP11-475A13.1
hsa-miR-4782-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558963
Biotype: lincRNA
Gene id: ENSG00000259737
Gene Name: RP11-475A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
271-296
0.015
9
7mer
2461-2466
0.011
1
6mer
296-313
0.011
8
6mer
1361-1386
0.002
1
AC007879.6
hsa-miR-4782-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438824
Biotype: lincRNA
Gene id: ENSG00000225064
Gene Name: AC007879.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
366-387
0.039
0
RP11-41O4.1
hsa-miR-4782-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584919
Biotype: lincRNA
Gene id: ENSG00000266258
Gene Name: RP11-41O4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-43
0.038
1
LINC00461
hsa-miR-4782-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515885
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
653-665
0.033
1
6mer
527-540
0.005
7
RP3-395M20.8
hsa-miR-4782-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448624
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-609
0.038
0
AC005224.2
hsa-miR-4782-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000458492
Biotype: lincRNA
Gene id: ENSG00000231595
Gene Name: AC005224.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-99
0.035
1
6mer
661-685
0.003
0
LINC00461
hsa-miR-4782-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509783
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
728-740
0.033
1
6mer
602-615
0.005
7
LINC00461
hsa-miR-4782-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513026
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-345
0.033
1
6mer
207-220
0.005
7
RP13-463N16.6
hsa-miR-4782-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000478294
Biotype: lincRNA
Gene id: ENSG00000242147
Gene Name: RP13-463N16.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-358
0.030
0
6mer
138-149
0.008
4
RP11-96H17.3
hsa-miR-4782-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602701
Biotype: sense_intronic
Gene id: ENSG00000269986
Gene Name: RP11-96H17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
209-228
0.038
0
AC006547.8
hsa-miR-4782-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412713
Biotype: antisense
Gene id: ENSG00000243762
Gene Name: AC006547.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
490-509
0.037
1
RP11-540O11.1
hsa-miR-4782-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000503052
Biotype: lincRNA
Gene id: ENSG00000251161
Gene Name: RP11-540O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1561-1581
0.037
7
RP11-405K6.1
hsa-miR-4782-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533049
Biotype: lincRNA
Gene id: ENSG00000254456
Gene Name: RP11-405K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-158
0.037
4
RP11-146D12.2
hsa-miR-4782-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421686
Biotype: processed_transcript
Gene id: ENSG00000240240
Gene Name: RP11-146D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
401-417
0.037
1
RP11-322L20.1
hsa-miR-4782-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557527
Biotype: lincRNA
Gene id: ENSG00000258804
Gene Name: RP11-322L20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1151-1177
0.037
1
RP11-124N3.3
hsa-miR-4782-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504827
Biotype: lincRNA
Gene id: ENSG00000249174
Gene Name: RP11-124N3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
323-338
0.037
0
RP11-166D19.1
hsa-miR-4782-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532315
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-123
0.031
2
6mer
636-648
0.006
5
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