LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
CSTF3-AS1
hsa-miR-4782-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500025
Biotype: antisense
Gene id: ENSG00000247151
Gene Name: CSTF3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1763-1771
0.030
0
6mer
1738-1758
0.012
8
7mer
1052-1072
0.004
0
RP3-323A16.1
hsa-miR-4782-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48306-48333
0.004
1
8mer
42681-42707
0.003
0
6mer
19208-19212
0.002
1
6mer
24991-24996
0.002
1
6mer
46063-46080
0.002
2
6mer
28199-28217
0.002
1
6mer
27178-27190
0.002
1
6mer
6065-6088
0.002
0
6mer
8303-8321
0.002
0
6mer
41772-41783
0.002
0
6mer
26215-26235
0.002
1
6mer
31155-31175
0.002
0
6mer
25979-25989
0.002
0
6mer
31555-31574
0.002
1
6mer
14981-14995
0.001
1
8mer+wobble
8843-8860
0.001
0
6mer
7508-7529
0.001
0
6mer
38724-38728
0.001
1
6mer
40701-40719
0.001
1
6mer
26331-26346
0.001
1
6mer
18123-18150
0.001
0
6mer
21568-21590
0.001
Not Conserved
6mer
52391-52406
0.001
0
6mer
42426-42452
0.001
1
6mer
23698-23708
0.001
Not Conserved
6mer
33686-33707
0.001
0
6mer
48491-48501
0.001
0
XLOC_009152
hsa-miR-4782-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019914
Biotype: transcript isomorph
Gene id: XLOC_009152
Gene Name: XLOC_009152
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1208-1228
0.035
0
6mer
180-203
0.011
1
DNMBP-AS1
hsa-miR-4782-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427093
Biotype: antisense
Gene id: ENSG00000227695
Gene Name: DNMBP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
192-199
0.045
1
RP11-802H3.2
hsa-miR-4782-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515263
Biotype: lincRNA
Gene id: ENSG00000248417
Gene Name: RP11-802H3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-323
0.045
10
GSN-AS1
hsa-miR-4782-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414544
Biotype: antisense
Gene id: ENSG00000235865
Gene Name: GSN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
213-226
0.027
1
7mer
4482-4497
0.010
Not Conserved
7mer
590-603
0.008
1
LINC00461
hsa-miR-4782-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3162-3174
0.026
1
7mer
608-623
0.014
2
6mer
3036-3049
0.004
7
XLOC_010938
hsa-miR-4782-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022637
Biotype: transcript isomorph
Gene id: XLOC_010938
Gene Name: XLOC_010938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-313
0.045
4
AC010729.2
hsa-miR-4782-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413960
Biotype: lincRNA
Gene id: ENSG00000236106
Gene Name: AC010729.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1705-1723
0.044
1
XLOC_002760
hsa-miR-4782-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006154
Biotype: transcript isomorph
Gene id: XLOC_002760
Gene Name: XLOC_002760
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-139
0.044
5
XLOC_005905
hsa-miR-4782-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012350
Biotype: transcript isomorph
Gene id: XLOC_005905
Gene Name: XLOC_005905
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-243
0.041
1
6mer
291-313
0.004
Not Conserved
AC005154.6
hsa-miR-4782-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5007-5025
0.009
1
7mer
2267-2292
0.009
2
8mer
4533-4540
0.008
0
6mer
167-185
0.003
1
7mer
1917-1938
0.003
1
6mer
9336-9340
0.003
2
6mer
12914-12925
0.002
1
6mer
7000-7016
0.002
1
6mer
2634-2652
0.002
0
6mer
10955-10972
0.001
1
6mer
12100-12124
0.001
0
RP11-64C1.1
hsa-miR-4782-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492683
Biotype: lincRNA
Gene id: ENSG00000240708
Gene Name: RP11-64C1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-577
0.018
1
7mer
1529-1550
0.014
0
7mer
417-429
0.008
0
7mer
441-460
0.004
0
TMEM108-AS1
hsa-miR-4782-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000505721
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2364-2389
0.021
0
7mer
2049-2065
0.012
2
8mer
1943-1963
0.011
0
RP11-572M11.4
hsa-miR-4782-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491578
Biotype: antisense
Gene id: ENSG00000240057
Gene Name: RP11-572M11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-139
0.043
5
RBM26-AS1
hsa-miR-4782-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456602
Biotype: antisense
Gene id: ENSG00000227354
Gene Name: RBM26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1514-1533
0.043
1
MCM3AP-AS1
hsa-miR-4782-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420074
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
601-615
0.035
1
7mer
1532-1546
0.005
1
6mer
932-949
0.003
0
RP11-567O16.1
hsa-miR-4782-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576836
Biotype: antisense
Gene id: ENSG00000263098
Gene Name: RP11-567O16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-347
0.043
1
XLOC_012618
hsa-miR-4782-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026271
Biotype: transcript isomorph
Gene id: XLOC_012618
Gene Name: XLOC_012618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1398-1422
0.043
11
LINC01043
hsa-miR-4782-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000565936
Biotype: lincRNA
Gene id: ENSG00000260343
Gene Name: LINC01043
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6798-6816
0.023
Not Conserved
7mer
6249-6265
0.014
3
6mer
6615-6633
0.005
1
6mer
1947-1963
0.001
Not Conserved
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