LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
XIST
hsa-miR-4782-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11971-11978
0.010
1
8mer
12563-12579
0.007
0
8mer
12271-12292
0.007
0
8mer
11096-11103
0.007
1
7mer
4179-4184
0.006
1
6mer
1336-1356
0.003
3
6mer
14921-14943
0.002
1
6mer
16176-16194
0.002
0
6mer
9397-9413
0.002
1
AC093627.10
hsa-miR-4782-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000492208
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
160-186
0.048
0
RP11-405K6.1
hsa-miR-4782-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533942
Biotype: lincRNA
Gene id: ENSG00000254456
Gene Name: RP11-405K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-281
0.035
4
8mer
440-460
0.013
Not Conserved
XLOC_012387
hsa-miR-4782-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025558
Biotype: transcript isomorph
Gene id: XLOC_012387
Gene Name: XLOC_012387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
503-522
0.040
2
6mer
1221-1225
0.005
1
6mer
1121-1125
0.003
0
CTC-499B15.7
hsa-miR-4782-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589227
Biotype: antisense
Gene id: ENSG00000267646
Gene Name: CTC-499B15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
876-901
0.047
0
RP11-678G14.4
hsa-miR-4782-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594927
Biotype: lincRNA
Gene id: ENSG00000268240
Gene Name: RP11-678G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2055-2076
0.022
0
7mer
2263-2281
0.017
0
6mer
386-402
0.008
0
XLOC_010775
hsa-miR-4782-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022932
Biotype: transcript isomorph
Gene id: XLOC_010775
Gene Name: XLOC_010775
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-245
0.039
1
7mer
738-751
0.009
1
LINC00418
hsa-miR-4782-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444605
Biotype: lincRNA
Gene id: ENSG00000236169
Gene Name: LINC00418
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-60
0.041
6
6mer
393-405
0.006
0
XLOC_010130
hsa-miR-4782-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020846
Biotype: transcript isomorph
Gene id: XLOC_010130
Gene Name: XLOC_010130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
68-82
0.041
0
6mer
127-143
0.006
2
XXbac-BPG254F23.7
hsa-miR-4782-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458375
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-214
0.047
0
AC093627.10
hsa-miR-4782-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000479592
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
531-557
0.043
0
6mer
38-60
0.003
Not Conserved
RP11-783L4.1
hsa-miR-4782-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557723
Biotype: lincRNA
Gene id: ENSG00000258502
Gene Name: RP11-783L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-475
0.019
1
7mer
397-417
0.015
0
7mer
244-260
0.013
0
XLOC_007734
hsa-miR-4782-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016354
Biotype: transcript isomorph
Gene id: XLOC_007734
Gene Name: XLOC_007734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
644-656
0.041
3
6mer
758-773
0.005
0
LINC00461
hsa-miR-4782-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511014
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3161-3173
0.029
1
7mer
607-622
0.014
2
6mer
3035-3048
0.004
7
AC114776.3
hsa-miR-4782-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2284-2290
0.025
1
7mer
1248-1262
0.021
1
XLOC_011252
hsa-miR-4782-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023404
Biotype: transcript isomorph
Gene id: XLOC_011252
Gene Name: XLOC_011252
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-155
0.028
6
7mer
524-529
0.014
0
6mer
402-409
0.005
1
AC006116.12
hsa-miR-4782-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589671
Biotype: antisense
Gene id: ENSG00000267192
Gene Name: AC006116.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-253
0.022
1
7mer
49-71
0.018
0
6mer
70-93
0.006
0
LINC00461
hsa-miR-4782-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505030
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3162-3174
0.023
1
7mer
608-623
0.013
2
6mer
3421-3434
0.006
6
6mer
3036-3049
0.004
7
XLOC_010997
hsa-miR-4782-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022711
Biotype: transcript isomorph
Gene id: XLOC_010997
Gene Name: XLOC_010997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
430-449
0.046
14
RP11-55K13.1
hsa-miR-4782-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570148
Biotype: antisense
Gene id: ENSG00000260495
Gene Name: RP11-55K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-47
0.029
3
8mer
657-677
0.016
0
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