LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
RP11-298D21.2
hsa-miR-4782-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563342
Biotype: antisense
Gene id: ENSG00000259914
Gene Name: RP11-298D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
363-385
0.039
Not Conserved
7mer
512-535
0.017
2
RP5-855D21.1
hsa-miR-4782-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606572
Biotype: antisense
Gene id: ENSG00000272240
Gene Name: RP5-855D21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-76
0.034
1
7mer
270-285
0.022
1
RP11-582E3.2
hsa-miR-4782-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540595
Biotype: lincRNA
Gene id: ENSG00000256226
Gene Name: RP11-582E3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-270
0.055
2
XLOC_003048
hsa-miR-4782-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006442
Biotype: transcript isomorph
Gene id: XLOC_003048
Gene Name: XLOC_003048
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
90-109
0.054
1
XLOC_001668
hsa-miR-4782-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1360-1377
0.022
0
6mer
502-517
0.013
1
8mer
2731-2749
0.009
1
6mer
2717-2732
0.005
1
6mer
3107-3127
0.004
1
PCAT19
hsa-miR-4782-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-471
0.035
1
6mer
109-122
0.017
1
AC093627.10
hsa-miR-4782-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000471299
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
377-403
0.051
0
RP11-123B3.2
hsa-miR-4782-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000423283
Biotype: antisense
Gene id: ENSG00000235939
Gene Name: RP11-123B3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
306-326
0.051
0
CTBP1-AS2
hsa-miR-4782-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000581398
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3296-3320
0.028
1
7mer
4216-4235
0.010
1
6mer
5308-5331
0.008
1
6mer
5112-5130
0.003
0
6mer
2730-2735
0.002
0
SMAD5-AS1
hsa-miR-4782-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_026763.1
Biotype: antisense
Gene id: NR_026763.1 (gene)
Gene Name: SMAD5-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
90-110
0.023
1
7mer
920-943
0.015
6
7mer
1667-1682
0.012
1
XLOC_003162
hsa-miR-4782-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007190
Biotype: transcript isomorph
Gene id: XLOC_003162
Gene Name: XLOC_003162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-417
0.036
1
7mer
272-277
0.015
3
SMAD5-AS1
hsa-miR-4782-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000297163
Biotype: antisense
Gene id: ENSG00000164621
Gene Name: SMAD5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
96-116
0.023
1
7mer
926-949
0.015
6
7mer
1673-1688
0.012
1
AC009480.3
hsa-miR-4782-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000402410
Biotype: antisense
Gene id: ENSG00000223911
Gene Name: AC009480.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-308
0.028
1
7mer
62-81
0.022
7
RP11-382E9.1
hsa-miR-4782-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452199
Biotype: lincRNA
Gene id: ENSG00000231718
Gene Name: RP11-382E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1854-1878
0.024
1
8mer
1841-1855
0.017
0
6mer
333-347
0.005
1
6mer
1414-1434
0.004
1
AC009110.1
hsa-miR-4782-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000415422
Biotype: lincRNA
Gene id: ENSG00000231589
Gene Name: AC009110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-431
0.049
6
ERVH48-1
hsa-miR-4782-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
570-584
0.029
0
7mer
1246-1263
0.014
0
7mer
485-506
0.006
Not Conserved
XLOC_008223
hsa-miR-4782-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017539
Biotype: transcript isomorph
Gene id: XLOC_008223
Gene Name: XLOC_008223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-139
0.048
0
CTA-796E4.5
hsa-miR-4782-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7806-7816
0.012
1
8mer
23840-23861
0.010
1
7mer
24868-24881
0.006
1
7mer
30641-30663
0.004
1
7mer
28458-28478
0.004
0
6mer
1801-1828
0.003
4
7mer
5342-5367
0.003
0
6mer
7236-7260
0.002
2
6mer
11734-11747
0.002
1
6mer
19580-19599
0.001
1
6mer
1856-1882
0.001
3
VLDLR-AS1
hsa-miR-4782-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000599229
Biotype: antisense
Gene id: ENSG00000236404
Gene Name: VLDLR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1113-1130
0.028
8
9mer
409-418
0.020
1
RP5-1021I20.8
hsa-miR-4782-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000613926
Biotype: antisense
Gene id: ENSG00000273711
Gene Name: RP5-1021I20.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
88-107
0.048
1
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