LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011349
hsa-miR-4782-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023239
Biotype: transcript isomorph
Gene id: XLOC_011349
Gene Name: XLOC_011349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
840-861
0.063
2
AC007364.1
hsa-miR-4782-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000295052
Biotype: lincRNA
Gene id: ENSG00000162947
Gene Name: AC007364.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
906-933
0.034
1
7mer
152-163
0.023
1
6mer
1527-1553
0.006
3
RP11-1D12.1
hsa-miR-4782-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519680
Biotype: sense_intronic
Gene id: ENSG00000254330
Gene Name: RP11-1D12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-55
0.053
1
7mer
615-639
0.009
0
RP11-691G17.1
hsa-miR-4782-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
658-676
0.026
1
7mer
730-755
0.014
0
6mer
1979-1983
0.010
1
6mer
990-995
0.010
1
6mer
1247-1265
0.002
Not Conserved
RP11-387D10.3
hsa-miR-4782-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500496
Biotype: sense_overlapping
Gene id: ENSG00000245479
Gene Name: RP11-387D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
840-861
0.062
2
USP3-AS1
hsa-miR-4782-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558831
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-608
0.048
10
7mer
1156-1173
0.010
1
6mer
884-903
0.003
1
LINC01128
hsa-miR-4782-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624927
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-352
0.038
1
7mer
124-143
0.024
1
AC024560.2
hsa-miR-4782-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
678-705
0.036
0
6mer
162-178
0.024
0
RP11-298J20.3
hsa-miR-4782-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449984
Biotype: antisense
Gene id: ENSG00000226899
Gene Name: RP11-298J20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
160-168
0.060
3
TPTEP1
hsa-miR-4782-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000585784
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-339
0.059
1
XLOC_008615
hsa-miR-4782-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018335
Biotype: transcript isomorph
Gene id: XLOC_008615
Gene Name: XLOC_008615
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
62-74
0.059
1
RP11-180C16.1
hsa-miR-4782-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610193
Biotype: antisense
Gene id: ENSG00000273489
Gene Name: RP11-180C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
772-790
0.041
1
8mer
1485-1507
0.014
1
6mer
308-323
0.004
0
XLOC_011198
hsa-miR-4782-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023896
Biotype: transcript isomorph
Gene id: XLOC_011198
Gene Name: XLOC_011198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
251-259
0.048
0
6mer
252-267
0.006
1
6mer
842-859
0.004
0
XLOC_003630
hsa-miR-4782-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007581
Biotype: transcript isomorph
Gene id: XLOC_003630
Gene Name: XLOC_003630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
46-71
0.058
1
XLOC_000777
hsa-miR-4782-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001449
Biotype: transcript isomorph
Gene id: XLOC_000777
Gene Name: XLOC_000777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-205
0.058
1
RP11-91I20.4
hsa-miR-4782-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531379
Biotype: antisense
Gene id: ENSG00000255321
Gene Name: RP11-91I20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
301-323
0.058
1
RP11-703G6.1
hsa-miR-4782-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510505
Biotype: lincRNA
Gene id: ENSG00000249614
Gene Name: RP11-703G6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
46-71
0.058
1
MIR6818
hsa-miR-4782-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24432-24440
0.012
3
6mer
48604-48619
0.006
7
7mer
17470-17495
0.005
1
7mer
19259-19274
0.004
0
8mer
47584-47598
0.004
2
6mer
46998-47002
0.004
6
6mer
2463-2467
0.003
6
6mer
33564-33580
0.003
7
6mer
11435-11439
0.002
3
6mer
16774-16789
0.002
1
6mer
25031-25053
0.002
1
6mer
6134-6146
0.001
0
6mer
17127-17153
0.001
Not Conserved
6mer
1907-1918
0.001
0
6mer
30779-30792
0.001
1
6mer
35509-35531
0.001
0
6mer
16530-16538
0.001
1
6mer
14295-14308
0.001
0
6mer
28504-28530
0.001
0
6mer
21464-21483
0.001
Not Conserved
PCAT19
hsa-miR-4782-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594315
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-92
0.057
1
RP11-626H12.2
hsa-miR-4782-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533170
Biotype: lincRNA
Gene id: ENSG00000254605
Gene Name: RP11-626H12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
328-348
0.057
1
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