LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
MUC19
hsa-miR-4782-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6205-6222
0.011
2
8mer
7291-7314
0.010
2
8mer
8241-8268
0.006
1
8mer
9078-9105
0.005
2
8mer
7972-7998
0.005
1
8mer
7524-7551
0.005
1
8mer
6816-6843
0.005
1
8mer
6996-7014
0.004
1
8mer
9438-9465
0.004
1
8mer
13394-13411
0.004
Not Conserved
7mer
21971-21985
0.003
0
8mer
15304-15331
0.003
0
8mer
8688-8715
0.003
0
8mer
13027-13054
0.003
0
6mer
24562-24582
0.003
1
7mer
6028-6033
0.003
1
8mer
10398-10425
0.003
0
7mer
20645-20659
0.003
0
7mer
6522-6543
0.003
1
7mer
17559-17580
0.002
0
7mer
17014-17040
0.002
Not Conserved
7mer
11750-11771
0.002
0
6mer
9596-9614
0.002
2
7mer
8520-8538
0.001
1
7mer
9138-9165
0.001
1
6mer
8431-8448
0.001
1
6mer
6317-6333
0.001
1
6mer
9168-9195
0.000
1
RP5-1198O20.4
hsa-miR-4782-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453688
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-473
0.096
1
AC005537.2
hsa-miR-4782-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000588324
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
791-817
0.072
1
8mer
323-349
0.022
0
RP11-475A13.2
hsa-miR-4782-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2246-2258
0.047
1
7mer
767-790
0.027
1
6mer
489-503
0.012
1
6mer
930-940
0.008
1
RP11-89M22.3
hsa-miR-4782-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548885
Biotype: antisense
Gene id: ENSG00000258115
Gene Name: RP11-89M22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43-63
0.083
1
RP11-125M16.1
hsa-miR-4782-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457945
Biotype: lincRNA
Gene id: ENSG00000234015
Gene Name: RP11-125M16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-735
0.057
11
7mer
688-697
0.026
9
RP11-387D10.3
hsa-miR-4782-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559473
Biotype: sense_overlapping
Gene id: ENSG00000245479
Gene Name: RP11-387D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
244-265
0.081
2
RP11-173E2.2
hsa-miR-4782-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506232
Biotype: lincRNA
Gene id: ENSG00000250977
Gene Name: RP11-173E2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19-33
0.078
3
CTC-260E6.6
hsa-miR-4782-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585816
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
461-482
0.078
0
AC006548.28
hsa-miR-4782-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48026-48043
0.009
Not Conserved
7mer
83925-83946
0.007
1
7mer
54997-55012
0.006
0
7mer
29176-29191
0.006
1
7mer
32967-32986
0.005
1
8mer
4840-4859
0.005
1
7mer
2064-2069
0.005
1
7mer
35376-35399
0.005
0
7mer
68776-68797
0.003
0
7mer
3260-3282
0.002
0
6mer
40903-40917
0.002
1
6mer
81328-81339
0.002
1
6mer
32465-32470
0.002
0
6mer
49105-49123
0.002
Not Conserved
6mer
61476-61495
0.002
1
6mer
4307-4317
0.002
0
6mer
47475-47498
0.002
Not Conserved
6mer
49899-49918
0.001
Not Conserved
6mer
75443-75460
0.001
0
7mer
81255-81281
0.001
0
6mer
81117-81130
0.001
1
6mer
33725-33752
0.001
Not Conserved
6mer
80252-80267
0.001
0
6mer
69894-69921
0.001
Not Conserved
RP11-380O24.1
hsa-miR-4782-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491930
Biotype: antisense
Gene id: ENSG00000254485
Gene Name: RP11-380O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
308-327
0.074
5
XLOC_004671
hsa-miR-4782-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010854
Biotype: transcript isomorph
Gene id: XLOC_004671
Gene Name: XLOC_004671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-145
0.055
1
7mer
243-265
0.019
0
USP3-AS1
hsa-miR-4782-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559737
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-392
0.057
10
7mer
940-957
0.011
1
6mer
668-687
0.003
1
RP11-1060G2.2
hsa-miR-4782-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000604017
Biotype: lincRNA
Gene id: ENSG00000271382
Gene Name: RP11-1060G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2073-2091
0.059
1
7mer
1969-1981
0.007
1
6mer
88-100
0.003
Not Conserved
ERVH48-1
hsa-miR-4782-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
123-137
0.042
0
7mer
799-816
0.019
0
7mer
38-59
0.008
Not Conserved
USP3-AS1
hsa-miR-4782-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560962
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-384
0.057
10
7mer
932-949
0.008
1
6mer
660-679
0.003
1
RP11-69C13.1
hsa-miR-4782-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000418574
Biotype: lincRNA
Gene id: ENSG00000255871
Gene Name: RP11-69C13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-100
0.050
1
7mer
634-651
0.011
1
6mer
2015-2028
0.006
0
XLOC_011240
hsa-miR-4782-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023261
Biotype: transcript isomorph
Gene id: XLOC_011240
Gene Name: XLOC_011240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
84-109
0.046
Not Conserved
7mer
2078-2103
0.019
2
XLOC_008420
hsa-miR-4782-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018690
Biotype: transcript isomorph
Gene id: XLOC_008420
Gene Name: XLOC_008420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1175-1194
0.064
1
RP11-286H14.8
hsa-miR-4782-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000466717
Biotype: antisense
Gene id: ENSG00000243230
Gene Name: RP11-286H14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
368-387
0.063
2
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