LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
MKLN1-AS
hsa-miR-4782-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454515
Biotype: antisense
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-128
0.035
1
ISPD-AS1
hsa-miR-4782-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438573
Biotype: antisense
Gene id: ENSG00000229688
Gene Name: ISPD-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2075-2093
0.035
1
RP11-53B2.4
hsa-miR-4782-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590042
Biotype: antisense
Gene id: ENSG00000267503
Gene Name: RP11-53B2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-464
0.035
2
RP11-1101K5.1
hsa-miR-4782-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521753
Biotype: lincRNA
Gene id: ENSG00000253434
Gene Name: RP11-1101K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
778-802
0.035
1
RP11-640N11.2
hsa-miR-4782-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000505153
Biotype: antisense
Gene id: ENSG00000250493
Gene Name: RP11-640N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6285-6302
0.020
7
6mer
41-51
0.015
11
LA16c-380A1.1
hsa-miR-4782-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567096
Biotype: lincRNA
Gene id: ENSG00000259840
Gene Name: LA16c-380A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-384
0.035
1
RP11-443C10.1
hsa-miR-4782-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519603
Biotype: lincRNA
Gene id: ENSG00000253163
Gene Name: RP11-443C10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-26
0.035
6
RP11-178L8.9
hsa-miR-4782-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602779
Biotype: antisense
Gene id: ENSG00000269901
Gene Name: RP11-178L8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-98
0.034
0
STX18-AS1
hsa-miR-4782-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608184
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
641-649
0.032
0
6mer
1932-1954
0.002
0
RP4-683M8.2
hsa-miR-4782-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456803
Biotype: lincRNA
Gene id: ENSG00000226133
Gene Name: RP4-683M8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-478
0.023
3
7mer
281-298
0.011
0
XLOC_012685
hsa-miR-4782-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026338
Biotype: transcript isomorph
Gene id: XLOC_012685
Gene Name: XLOC_012685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
933-947
0.017
1
7mer
185-203
0.009
1
6mer
356-366
0.004
1
6mer
1095-1117
0.004
1
SLC8A1-AS1
hsa-miR-4782-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418854
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
202-215
0.034
1
LINC00469
hsa-miR-4782-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000321800
Biotype: lincRNA
Gene id: ENSG00000177338
Gene Name: LINC00469
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-612
0.034
2
XLOC_001137
hsa-miR-4782-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000709
Biotype: transcript isomorph
Gene id: XLOC_001137
Gene Name: XLOC_001137
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1172-1187
0.024
5
6mer
1155-1159
0.010
4
MIR663AHG
hsa-miR-4782-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615682
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-200
0.030
1
6mer
784-810
0.003
Not Conserved
MIR503HG
hsa-miR-4782-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445415
Biotype: lincRNA
Gene id: ENSG00000223749
Gene Name: MIR503HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-114
0.025
3
6mer
4-28
0.009
3
XLOC_010696
hsa-miR-4782-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021689
Biotype: transcript isomorph
Gene id: XLOC_010696
Gene Name: XLOC_010696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-128
0.034
1
RP11-12K11.2
hsa-miR-4782-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496403
Biotype: lincRNA
Gene id: ENSG00000240033
Gene Name: RP11-12K11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
606-629
0.034
Not Conserved
XLOC_002618
hsa-miR-4782-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005993
Biotype: transcript isomorph
Gene id: XLOC_002618
Gene Name: XLOC_002618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
803-808
0.029
2
6mer
185-206
0.004
0
MKLN1-AS
hsa-miR-4782-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447514
Biotype: antisense
Gene id: ENSG00000236753
Gene Name: MKLN1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-40
0.033
1
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